FC920998

Overview
NameFC920998
Unique NameFC920998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:644..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.775e-42
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287
            PGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct:  179 PGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273          

HSP 2 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query:   57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275
            GFTK NELFVGR+A +G A SL+GE ITGKG L+QLN+ETGIPI E EPL+LF ++F  + A+      G+FV +
Sbjct:   93 GFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE 167          
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.624e-42
Identity = 80/95 (84.21%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287
            PGK  +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct:  180 PGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274          

HSP 2 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:   57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN--PGTGKFVTD 275
            GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKF+ D
Sbjct:   92 GFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDD 166          
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.734e-42
Identity = 79/95 (83.16%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287
            PGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  182 PGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 89.7373 bits (221), Expect = 4.767e-18
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 3
Query:   57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275
            GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      G+F+ D
Sbjct:   94 GFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168          
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.734e-42
Identity = 79/95 (83.16%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287
            PGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  182 PGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 91.2781 bits (225), Expect = 1.638e-18
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query:   57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275
            GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   94 GFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168          
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.989e-40
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 3
Query:    3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287
            PGK++RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct:  170 PGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264          

HSP 2 Score: 91.2781 bits (225), Expect = 1.638e-18
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 3
Query:   57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275
            GFTK+NELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   84 GFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD 158          
The following BLAST results are available for this feature:
BLAST of FC920998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL2.775e-4285.26Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC3.624e-4284.21Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG4.734e-4283.16Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLLC4.734e-4283.16Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH1.989e-4084.21Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC32201G12EF RVDevelopN Citrus clementina cDNA clone C32201G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920998 ID=FC920998; Name=FC920998; organism=Citrus clementina; type=EST; length=403bp
CTCCAGGCAAAAGCTTAAGATCAGCGTTGGGTCTCAAGGAAGGAGGTCCC
ATATTTGGATTCACGAAGTCAAACGAGCTGTTTGTGGGAAGATTGGCTCA
GTTGGGTATTGCATTCTCTTTGATTGGAGAAATCATAACAGGGAAAGGAG
CTCTAGCACAACTCAACATTGAGACTGGGATCCCCATCAACGAAATCGAG
CCACTTGTGCTGTTCAACGTTATCTTCTTCTTTGTTGCCGCATTGAATCC
TGGAACTGGTAAATTTGTCACAGATGAAGATGAGGAGTAGATGAAACGTG
GAAGCTGTTCCTGTTTACTTTATTATGATAAACTTGAATTTCCATTCAAT
GTAAAAGATAATATTTTGTCGTCAAAAAAAAAAAAATAAAAAAAAAAAAA
AAA
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