FC920998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 2.775e-42 Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 3 Query: 3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287 PGK +RSALGLK GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE Sbjct: 179 PGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273 HSP 2 Score: 86.6557 bits (213), Expect = 4.035e-17 Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 3 Query: 57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275 GFTK NELFVGR+A +G A SL+GE ITGKG L+QLN+ETGIPI E EPL+LF ++F + A+ G+FV + Sbjct: 93 GFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE 167
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.624e-42 Identity = 80/95 (84.21%), Postives = 90/95 (94.74%), Query Frame = 3 Query: 3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287 PGK +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE Sbjct: 180 PGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274 HSP 2 Score: 90.8929 bits (224), Expect = 2.140e-18 Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 3 Query: 57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN--PGTGKFVTD 275 GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+ GKF+ D Sbjct: 92 GFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDD 166
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 4.734e-42 Identity = 79/95 (83.16%), Postives = 90/95 (94.74%), Query Frame = 3 Query: 3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287 PGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+ Sbjct: 182 PGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 HSP 2 Score: 89.7373 bits (221), Expect = 4.767e-18 Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 3 Query: 57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275 GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+ G+F+ D Sbjct: 94 GFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 4.734e-42 Identity = 79/95 (83.16%), Postives = 90/95 (94.74%), Query Frame = 3 Query: 3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287 PGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+ Sbjct: 182 PGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 HSP 2 Score: 91.2781 bits (225), Expect = 1.638e-18 Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 3 Query: 57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275 GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+ GKFV D Sbjct: 94 GFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168
BLAST of FC920998 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.989e-40 Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 3 Query: 3 PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 287 PGK++RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE Sbjct: 170 PGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264 HSP 2 Score: 91.2781 bits (225), Expect = 1.638e-18 Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 3 Query: 57 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 275 GFTK+NELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F + A+ GKFV D Sbjct: 84 GFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD 158 The following BLAST results are available for this feature:
BLAST of FC920998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920998 ID=FC920998; Name=FC920998; organism=Citrus clementina; type=EST; length=403bpback to top |