FC921068

Overview
NameFC921068
Unique NameFC921068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: AHP5_ARATH (Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 9.800e-54
Identity = 102/148 (68.92%), Postives = 126/148 (85.14%), Query Frame = 3
Query:  123 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 563
            VV+QLQ+QF D+  SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD  KLIN+M+ +LE+P  VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREGC+RCLQQV +EY MLK+KLQ LF +E+QIL AGG++P
Sbjct:    5 VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYKMLKTKLQDLFNLEKQILQAGGTIP 152          
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: AHP3_ARATH (Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.762e-48
Identity = 93/148 (62.84%), Postives = 119/148 (80.41%), Query Frame = 3
Query:  123 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 563
            +++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI++MARAL+Q   VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EGC+RCLQQV  EY  LK+KLQ LF +EQQI+ AGG +P
Sbjct:    4 LIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQDLFNLEQQIVQAGGRIP 151          
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: AHP1_ARATH (Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.209e-47
Identity = 88/149 (59.06%), Postives = 119/149 (79.87%), Query Frame = 3
Query:  117 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 563
            MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV  EY ++K++L+TLF++EQQI+A+GG +P
Sbjct:    1 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVASGGMIP 148          
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: AHP2_ARATH (Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.585e-46
Identity = 89/148 (60.14%), Postives = 120/148 (81.08%), Query Frame = 3
Query:  123 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 563
            +++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI++MARAL+    VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EGC+RCLQQV  EY  LK+KLQ +F +E+QI+ AGG VP
Sbjct:    4 LIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYKALKTKLQDMFNLEKQIIQAGGIVP 151          
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: HP1_ORYSJ (Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.775e-32
Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  135 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILA 545
            L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A  LEQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+GC+  L  V +++  L++K QT+ ++EQQI A
Sbjct:    6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA 143          
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: AHP6_ARATH (Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.624e-32
Identity = 71/149 (47.65%), Postives = 106/149 (71.14%), Query Frame = 3
Query:  126 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARAL-EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQ-ILAAGGSVPL 566
            V +LQ       +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EKL+ ++   L ++   D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR GC+R L+ V HEY  LK+ +  LF++EQQ ILAAG   P+
Sbjct:    6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYHYLKNMMHELFQLEQQRILAAGVRYPM 154          
BLAST of FC921068 vs. ExPASy Swiss-Prot
Match: AHP4_ARATH (Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.355e-29
Identity = 57/119 (47.90%), Postives = 89/119 (74.79%), Query Frame = 3
Query:  177 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQ 533
            +GY+D+QF +L +LQD+++P+FV EV++L+F D+ +LIN++ +ALE+   DF ++DS++HQ KGSS+SIGA +VK  C  FR +C A N EGC+R  QQ+  E++ L+ KL+  F+  Q
Sbjct:    9 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQASQ 127          
The following BLAST results are available for this feature:
BLAST of FC921068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AHP5_ARATH9.800e-5468.92Histidine-containing phosphotransfer protein 5 OS=... [more]
AHP3_ARATH2.762e-4862.84Histidine-containing phosphotransfer protein 3 OS=... [more]
AHP1_ARATH5.209e-4759.06Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP2_ARATH2.585e-4660.14Histidine-containing phosphotransfer protein 2 OS=... [more]
HP1_ORYSJ2.775e-3249.28Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP6_ARATH3.624e-3247.65Histidine-containing phosphotransfer protein 6 OS=... [more]
AHP4_ARATH8.355e-2947.90Histidine-containing phosphotransfer protein 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32202G03EF RVDevelopN Citrus clementina cDNA clone C32202G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921068 ID=FC921068; Name=FC921068; organism=Citrus clementina; type=EST; length=790bp
GAGTTGTGGGAGTAAATGATATATGCACTCTAGAAGATCTGATCTTTTCT
CAAAATCGCATCGGATCGTTTTTGAGAAACGAAGGAAAGAGAGAGGCATC
ACGCATAGCAAAAACCATGGATGTCGTCAGTCAGTTGCAGAAGCAGTTTA
TTGATTTCAGTTCATCTCTTTACCGCGAGGGATATGTGGATGATCAGTTC
AGCCAGTTGCACAAACTGCAAGATGAGAGCAGCCCAGACTTTGTAGTAGA
GGTTGCGTCTCTCTTCTTTGACGACGCTGAGAAGCTTATTAACAGTATGG
CCAGAGCTTTAGAACAACCGTGTGTGGATTTCAAACAGGTAGATTCACAT
GTCCATCAATTGAAGGGTAGTAGTTCCAGCATTGGTGCACTGAGAGTTAA
AAATGTATGCATTGCCTTCAGAAGTTTTTGTGATGCCCAAAACCGTGAAG
GGTGTATGAGATGTCTGCAACAAGTGAGTCATGAGTACACTATGTTGAAG
AGCAAGCTTCAAACACTATTCAGGATGGAGCAACAAATACTTGCTGCTGG
TGGGTCAGTTCCTTTGGAATAAATGGCATTGATGTTATCCCCCTATTGGT
AAACAGAAAGAAGAGCGATCTTTTATCATTGCAATTACTTTATGAACGAG
TTTTTGTAGTTCTGATTTCCAGCTACTTTGATTTGATGTCAAGGATAGTA
TAGATGTATGTTTAGATCTACAGGAGAGATTGTAGTGCAGTAAGATTCTA
TCTCTCTCTGCTATAGCAACATACGTCGTCTATCATGGCT
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