FC921073

Overview
NameFC921073
Unique NameFC921073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_ORYSJ (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.678e-21
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGSG 249
            MDA+D+V DPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIPINNIIVGSG
Sbjct:    1 MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: S61G1_ARATH (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.862e-21
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIPINNIIVG+
Sbjct:    1 MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGA 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: S61G3_ARATH (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana GN=SEC61G3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            M+AID+  DPLRDFAK S+RLV+RCHKPDRKEFTKVA RTAI            KL+FIPINNIIVGS
Sbjct:    1 MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: S61G1_GRYOR (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis GN=SEC61G PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD +    +P R FAKDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:    1 MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_BRABE (Protein transport protein Sec61 subunit gamma OS=Branchiostoma belcheri GN=SEC61G PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 40/68 (58.82%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD +    +P R FAKDS RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:    1 MDQLVQFVEPARQFAKDSYRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_XENLA (Protein transport protein Sec61 subunit gamma OS=Xenopus laevis GN=sec61g PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 39/68 (57.35%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: S61G2_DROME (Protein transport protein Sec61 gamma-2 subunit OS=Drosophila melanogaster GN=Sec61gamma PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD +    +P R FAKDS+RLVKRC KPDRKEF K+A  TA+            KLI IPINNIIVGS
Sbjct:    1 MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFCIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: S61G1_DROME (Protein transport protein Sec61 gamma-1 subunit OS=Drosophila melanogaster GN=SEC61G1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD +    +P R FAKDS+RLVKRC KPDRKEF K+A  TA+            KLI IPINNIIVGS
Sbjct:    1 MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_HARAN (Protein transport protein Sec61 subunit gamma OS=Harpagifer antarcticus GN=sec61g PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 39/67 (58.21%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD +    +P R F KDS+RLVKRC KPDRKEF KVA  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKVAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_GADMO (Protein transport protein Sec61 subunit gamma OS=Gadus morhua GN=sec61g PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 39/67 (58.21%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD I    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQIMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
The following BLAST results are available for this feature:
BLAST of FC921073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SC61G_ORYSJ1.678e-2173.91Protein transport protein Sec61 subunit gamma OS=O... [more]
S61G1_ARATH2.862e-2175.00Protein transport protein Sec61 subunit gamma-1 OS... [more]
S61G3_ARATH2.051e-1969.12Protein transport protein Sec61 subunit gamma-3 OS... [more]
S61G1_GRYOR5.780e-1458.82Protein transport protein Sec61 subunit gamma OS=G... [more]
SC61G_BRABE1.288e-1358.82Protein transport protein Sec61 subunit gamma OS=B... [more]
SC61G_XENLA1.682e-1357.35Protein transport protein Sec61 subunit gamma OS=X... [more]
S61G2_DROME2.869e-1357.35Protein transport protein Sec61 gamma-2 subunit OS... [more]
S61G1_DROME2.869e-1357.35Protein transport protein Sec61 gamma-1 subunit OS... [more]
SC61G_HARAN3.747e-1358.21Protein transport protein Sec61 subunit gamma OS=H... [more]
SC61G_GADMO3.747e-1358.21Protein transport protein Sec61 subunit gamma OS=G... [more]

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Properties
Property NameValue
Genbank descriptionC32202G08EF RVDevelopN Citrus clementina cDNA clone C32202G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921073 ID=FC921073; Name=FC921073; organism=Citrus clementina; type=EST; length=520bp
CGGGGAGATCTCAAATTCGCTTCATTGAAGGAGAAAACGAAAATGGACGC
CATCGACAACGTCTTCGATCCGCTCAGAGATTTCGCAAAAGACAGCTTGC
GTCTCGTCAAGAGGTGTCACAAGCCCGATCGCAAAGAATTCACGAAGGTT
GCGTTCCGTACGGCGATCGGATTCGTTGTCATGGGATTCGTAGGTTTCTT
CGTCAAGTTGATCTTCATCCCTATCAACAATATTATTGTTGGATCTGGAT
AAGGCTGCAGAGTTGCTGGCTTTGATGATGGAAGTTATCAGCAGATTGAT
TCACACCCTTCAACGAAGGAATGAGTTAACCCGTTTAGAATTTTATTAGA
CAGTACCTCAAATATGCCTTGAATCTTTTTGAATTAGACTTTATATTTGC
TTTTAAGTTGACTTACTCCGGAAATATTTTACTTTTGTCGAAAATTAGTT
TGTTCTTACAGATTGGAACTTGCTACGTTAAATCATTTTGTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAA
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