FC921074

Overview
NameFC921074
Unique NameFC921074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14231 contig Ccv1_Contig14231:1..681. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RT14_VICFA (Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.687e-34
Identity = 68/100 (68.00%), Postives = 87/100 (87.00%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +SEKRNI DHKRRLLA K+EL+RKLYK+  +D +LP+++R+K   KL++LPRNSSF R+RNRCI TGR R+VYE FR+SRIVFRSLA++G LMG+KK+SW
Sbjct:    1 MSEKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNRCISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RT14_OENBE (Ribosomal protein S14, mitochondrial OS=Oenothera bertiana GN=RPS14 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 67/98 (68.37%), Postives = 84/98 (85.71%), Query Frame = 2
Query:  158 EKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            EKRNI DHKRRLLATK+EL+RKLYK+   D  LP+++R+K+  KL++LPRNSSF R+RNRCI TGR R+VYE FR+SRIVFR LA++G LMG+KK+SW
Sbjct:    2 EKRNIRDHKRRLLATKYELRRKLYKAFCNDPALPSDMRDKHRYKLSKLPRNSSFARVRNRCISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RT14_BRANA (Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.106e-31
Identity = 64/100 (64.00%), Postives = 84/100 (84.00%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +SEK+N  DHKRRLLA KFEL+RKLYK+  +D +LP+++R+K+  KL++LPRNSSF R+RNRCI TGR R+V E FR+ RIVFR LA++G LMG+KK+SW
Sbjct:    1 MSEKQNSRDHKRRLLAAKFELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNRCISTGRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RT14_MARPO (Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.198e-28
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  170 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            I DHKRRLL  K+ELKR  YK++ +D NLP ++R +Y  KL++LPRNSS TR+RNRCIFTGR R+VY+ FR+SRIVFR LA++G L+G+ K+ W
Sbjct:    6 IRDHKRRLLVAKYELKRMHYKAICQDRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRCIFTGRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RT14_PROWI (Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  176 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            D KRR L  K+E KR LYK+L  D NL  ++R     KL +LPRNSS  R++NRCI TGR  +VY+  R+SRI FR LANQG++ G  K+SW
Sbjct:    8 DLKRRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGRGHSVYKFCRISRIKFRDLANQGLIQGCVKSSW 99          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_MARMM (30S ribosomal protein S14 OS=Maricaulis maris (strain MCS10) GN=rpsN PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  149 TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            T + +RN+   KR  LA ++  KR+  K++ R+  LP E R     KLA LPRNS+ TR+RNRC  TGR RA Y KFRMSRI  R  A+QGM+ G+ K+SW
Sbjct:    4 TSAIERNL---KRARLAKRYAAKREQLKAIARNQELPVEERFAAQLKLAELPRNSAVTRIRNRCEITGRPRAFYRKFRMSRIAMRDYASQGMIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_JANSC (30S ribosomal protein S14 OS=Jannaschia sp. (strain CCS1) GN=rpsN PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  182 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            KR  L  K+  KR   K + RD +LP E R K   KLA+LPRNSS TRL NRC  TGR RA Y K +MSRI  R LA+ G + G+ K+SW
Sbjct:   12 KRERLVAKYADKRAALKEIARDEDLPMEDRFKARLKLAKLPRNSSATRLNNRCQLTGRPRAYYRKLKMSRIKLRDLASNGQIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_XANP2 (30S ribosomal protein S14 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsN PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE + +RR LAT    KR   K++  D  LP E R +   KLA +PRN +  R+RNRC  TGR RA Y K +MSRI  R L NQGM+ G+ K+SW
Sbjct:    1 MAKKSAIETNERRRKLATGHAAKRARLKAIVNDKTLPIEERFQATLKLAEMPRNGAKIRIRNRCEVTGRPRAFYRKLKMSRIALRELGNQGMVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_MESSB (30S ribosomal protein S14 OS=Mesorhizobium sp. (strain BNC1) GN=rpsN PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++++RR +A ++  KR   K++  D   P E R K   +LA LPRNSS TR+RNRC  TGR RA Y K +MSRI  R L +QG++ G+ K+SW
Sbjct:    9 KNNRRRKMADRYANKRAALKAIVMDQGKPMEERFKAQLQLAALPRNSSKTRIRNRCEVTGRPRAFYRKLKMSRIALRELGSQGLIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHOCS (30S ribosomal protein S14 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpsN PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRL-LATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K ++E +KRR  +  +   KR+  +++ RD  LP E R + + KLA +PRN S  R+RNRC  TGR RA Y KFR+SR+  R LA+ G + G+ K+SW
Sbjct:    1 MAKKSSVEKNKRRRKMVAQQAPKREALRAIARDRTLPPEERFQAVLKLAEMPRNGSKVRIRNRCELTGRPRAYYRKFRLSRVTLRELASTGQIPGMTKSSW 101          
The following BLAST results are available for this feature:
BLAST of FC921074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
RT14_VICFA6.687e-3468.00Ribosomal protein S14, mitochondrial OS=Vicia faba... [more]
RT14_OENBE4.334e-3368.37Ribosomal protein S14, mitochondrial OS=Oenothera ... [more]
RT14_BRANA3.106e-3164.00Ribosomal protein S14, mitochondrial OS=Brassica n... [more]
RT14_MARPO4.198e-2861.70Ribosomal protein S14, mitochondrial OS=Marchantia... [more]
RT14_PROWI2.088e-1954.35Ribosomal protein S14, mitochondrial OS=Prototheca... [more]
RS14_MARMM4.652e-1950.5030S ribosomal protein S14 OS=Maricaulis maris (str... [more]
RS14_JANSC6.718e-1853.3330S ribosomal protein S14 OS=Jannaschia sp. (strai... [more]
RS14_XANP22.553e-1747.5230S ribosomal protein S14 OS=Xanthobacter autotrop... [more]
RS14_MESSB4.354e-1747.3130S ribosomal protein S14 OS=Mesorhizobium sp. (st... [more]
RS14_RHOCS5.687e-1743.5630S ribosomal protein S14 OS=Rhodospirillum centen... [more]

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Properties
Property NameValue
Genbank descriptionC32202G09EF RVDevelopN Citrus clementina cDNA clone C32202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921074 ID=FC921074; Name=FC921074; organism=Citrus clementina; type=EST; length=681bp
GGAAACTAGGTTAGATTAAGTTCTCAGAAAACTTAAAACCCGTGTTCCTC
TGTCTGCCTGTCTTTCTGTCTCCATGGCTCTTGCTTTCTCCCGTGAAAAG
ATCTTAAGTGCAACTTCTCAGTGCATGAACTTCTGGCGGAAAATGAGTAC
GGTGTCGGAGAAGCGAAACATAGAAGATCACAAACGCAGATTGCTGGCTA
CTAAATTCGAATTGAAGCGAAAGCTTTACAAATCCCTTTACAGAGATGTC
AATCTTCCCACCGAGGTGCGTGAGAAATACCTCTGTAAGTTAGCCCGTTT
GCCGAGAAACAGTTCCTTTACACGCCTAAGAAACCGATGTATTTTCACTG
GTCGATCTCGCGCCGTGTACGAGAAATTCAGAATGTCTCGAATCGTTTTT
CGCAGTTTGGCAAATCAAGGCATGTTGATGGGCGTCAAGAAAGCTTCTTG
GTAGCCTGAGCTTTGGTAGGTATTTTACTGGAAAATATCCAATGAAATAA
TTGGGGTCTGGCCTGCGTATGTTTATTCGGGGCGTTTTGTAAGTTTTCAT
ACTTTGTGAAATTATTATTTATTTTGGCCCTGTTAATCATTTTTTTTTGC
TTAAATTGATATGAATATGCCATACACAGTTCAGTGAAATTGGGAGACTT
GATAATTTTGAAGATGTGTGTTATTGTATTG
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