FC921075

Overview
NameFC921075
Unique NameFC921075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACRJ (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVKKMCE CKI+KR GRV VICSAN KHKQRQG
Sbjct:    1 MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACRD (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVKKMCE CKI+KR GRV VICSAN KHKQRQG
Sbjct:    1 MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACCB (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVKKMCE CK+++R+GRV +ICSAN KHKQRQG
Sbjct:    1 MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACC3 (50S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVKKMCE CK+++R+GRV +ICSAN KHKQRQG
Sbjct:    1 MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_SYNY3 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR+SVKKMC+ C++I+RRGRV VICSAN KHKQRQG
Sbjct:    1 MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACJO (50S ribosomal protein L36 OS=Lactobacillus johnsonii GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVK MCE CKIIKR+GRV VICSAN KHKQRQG
Sbjct:    1 MKVRPSVKPMCEHCKIIKRQGRVMVICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACBA (50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVK MCE CK+IKR+GRV VICSAN KHKQRQG
Sbjct:    1 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38          
BLAST of FC921075 vs. ExPASy Swiss-Prot
Match: RL36_LACGA (50S ribosomal protein L36 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 1
Query:  103 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 216
            MKVR SVK MCE CKIIKR GRV VICSAN KHKQRQG
Sbjct:    1 MKVRPSVKPMCEHCKIIKRHGRVMVICSANPKHKQRQG 38          
The following BLAST results are available for this feature:
BLAST of FC921075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL36_LACRJ2.495e-1184.2150S ribosomal protein L36 OS=Lactobacillus reuteri... [more]
RL36_LACRD2.495e-1184.2150S ribosomal protein L36 OS=Lactobacillus reuteri... [more]
RL36_LACCB5.559e-1176.3250S ribosomal protein L36 OS=Lactobacillus casei (... [more]
RL36_LACC35.559e-1176.3250S ribosomal protein L36 OS=Lactobacillus casei (... [more]
RL36_SYNY37.260e-1178.9550S ribosomal protein L36 OS=Synechocystis sp. (st... [more]
RL36_LACJO7.260e-1184.2150S ribosomal protein L36 OS=Lactobacillus johnson... [more]
RL36_LACBA7.260e-1181.5850S ribosomal protein L36 OS=Lactobacillus brevis ... [more]
RL36_LACGA9.482e-1184.2150S ribosomal protein L36 OS=Lactobacillus gasseri... [more]
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Properties
Property NameValue
Genbank descriptionC32202G10EF RVDevelopN Citrus clementina cDNA clone C32202G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921075 ID=FC921075; Name=FC921075; organism=Citrus clementina; type=EST; length=564bp
GAGGGAAAGGCGCACATCGCTGGGGAAAGTTAAGCGAGCAAGTGTGTGTC
AGTTTGTTTGTTGAGTGCTTGGAAGTCTTCCCTTCAGCCTTTCCAATCAG
CAATGAAGGTGCGATCATCCGTGAAGAAGATGTGTGAGTTTTGTAAGATA
ATTAAACGTCGTGGTCGTGTGTATGTAATTTGCTCTGCTAATCTGAAGCA
CAAGCAACGACAGGGCATGTCAACATTCGCAAATGAAGGACTAATCCCTT
TCACGTCCGTGGAGACCAATGTCAAGCAAGAAATTGCACCAAATCACAAC
ATCAGAGCAGGGCTGGCTTCTCTGATACCAAAAAAGCATGAGTCATGGTC
AATCATCTATGGATGGAGGGCCAGTCTTGCATCTCTGCTGTTCAAACAAG
GAAATTAGATCAGATCATAAAAATAGGATTATTTTGAAGTTATAATCAAC
TGATAGTGCTGGATTTTTGTGCTGCCTTTGGATGTTTTGTTGGCGTTGCT
GCTTTATTTCAATCTATGTTACCATGGTCACATTTTAAAAATGCATGCTT
TAAGTGTTTGGTTC
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