FC921076

Overview
NameFC921076
Unique NameFC921076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921076_ssr556 microsatellite FC921076_ssr556:556..571. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11457 contig Ccv1_Contig11457:87..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921076 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 53/152 (34.87%), Postives = 74/152 (48.68%), Query Frame = 1 
Query:  106 MMHMTFYWGRQVTLLFDFWRTDSWPSYALTLLACFLFSAFYQYLEDRRVRLNRIAVGQKPAIADVETPLLQRKVVGKFSAARIAG---TALFGINSGVGYLLMLAIMSFNGGVFLAVVVGLMIGYLV-----FRSESDD--VTLVVDNPCAC 531
            MMHMTF+WG+   +LF  W   S   YAL L+  F  +   ++L      L R + G                     SA R AG   TA++ +  G+ YL+MLA+MSFN GVFL  + G  +G+++     FR+ SDD     V  + CAC
Sbjct:   41 MMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSS--LLRGSTGD--------------------SANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGCAC 170
The following BLAST results are available for this feature:
BLAST of FC921076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH1.106e-1334.87Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionC32202G11EF RVDevelopN Citrus clementina cDNA clone C32202G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921076 ID=FC921076; Name=FC921076; organism=Citrus clementina; type=EST; length=717bp
GATCTAACAACTCATTGATCCTCGTCACCATCTTCTTTCTTCTCCTTGTT
CTCTCCTCCACAATTTTTTTTTTCTTTTCCTGAAATCCAAAACCGAGCTG
CGAAGATGATGCACATGACCTTCTACTGGGGCCGGCAAGTGACCCTCTTG
TTCGACTTTTGGCGTACCGATTCATGGCCGAGTTACGCGCTGACCCTTCT
CGCCTGCTTCCTCTTCTCCGCCTTTTACCAGTACCTGGAGGACAGGCGCG
TCCGCTTGAACCGGATCGCCGTCGGACAGAAGCCCGCCATCGCCGACGTC
GAGACCCCGCTGCTGCAGAGAAAAGTCGTCGGGAAATTCTCGGCGGCGAG
GATCGCCGGGACGGCCCTGTTTGGGATCAATTCTGGGGTGGGGTACTTGC
TGATGCTGGCGATCATGTCGTTTAATGGGGGCGTGTTCTTGGCAGTCGTT
GTGGGGCTTATGATTGGTTACTTGGTCTTTAGAAGTGAAAGTGATGATGT
CACCCTTGTTGTTGATAATCCTTGTGCTTGCGCTTAGTGATTACGAAGGC
TCTCCCTCTCTCTCTCTCTCTTTTTTTTGTTTGGGGTTTCTGGGTAATTT
ATTTCTCTGTGTAATACTGTCGCTTTGTGCCATGTATCTTTTTATCTTTG
TGCTATAGGTTGTGAAACTGATTTGTAATGATATTACAAAGGGGAAGGAG
ACATACCATCTTGTTTT
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