FC921161 | Citrus Genome Database

Overview


Name	FC921161
Unique Name	FC921161
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	165

Libraries


Library Name	Type
RVDevelopN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14256	contig	Ccv1_Contig14256:1..165.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

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BLAST of FC921161 vs. ExPASy Swiss-Prot
Match: M030_ARATH (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -3

Query:    8 KFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 163
            KF KSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS
Sbjct:    6 KFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 57

The following BLAST results are available for this feature:

BLAST of FC921161 vs. ExPASy Swiss-Prot

BLAST of FC921161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
M030_ARATH	1.081e-25	98.08	Uncharacterized mitochondrial protein AtMg00030 OS...	[more]

Properties


Property Name	Value
Genbank description	C32101H02EF RVDevelopN Citrus clementina cDNA clone C32101H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921161 ID=FC921161; Name=FC921161; organism=Citrus clementina; type=EST; length=165bp
TCGCCGGGGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACG
CTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATC
TCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGG
ACTTTTCAAACTTAG