FC921164

Overview
NameFC921164
Unique NameFC921164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921164_ssr70 microsatellite FC921164_ssr70:70..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15438 contig Ccv1_Contig15438:43..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG+ V   +  T   +  HL  +  P+EQ+       + PIYA DS++ LL + G  P++ + DSV++CYEA VI  F+ L + YL     ++ +  EI+G+    S        R +      L+  K  T QF +++P+ +++ I LQ    Y
Sbjct:   62 SGVFVWTALLLTGHQIYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG+ V   +  T   +  HL  +  P+EQ+       + PIYA DS++ LL + G  P++ + DSV++CYEA VI  F+ L + YL     ++ +  EI+G+    S        R +      L+  K  T QF +++P+ +++ I LQ    Y
Sbjct:   62 SGVFVWTALLLTGHQIYSHLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 639
            +G+ ++LT+  ++  + QHL ++  P+ QK       M PIY+VDS+V L+  K       ++D+ +ECYEA VI  FM  + +YL I     I+  E K ++ +H  P+    P    +    L   K    Q+ V+RPI ++  +  ++L +Y         +WT+ +I
Sbjct:   52 AGIFLLLTIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALVYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLILHLEAKDQQ-NHILPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTALVCEILDVYDEGNFGFSNAWTYLVI 215          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG+ V   +  T   +  HL  +  P+EQ+      L+ PIYA DS++ LL + G   ++ + DSV++CYEA VI  F++L + YL     +  +  EI+G+    S        R +      L+  K  T QF +++P+ ++  I LQ    Y
Sbjct:   59 SGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKY 209          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 48/171 (28.07%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 639
            +G+ ++LT+  ++ ++ QHL ++  P+ QK       M PIY++DS++ L           ++D+ +ECYEA VI  FM  + +YL       ++  E K ++ H   P+    P T  +    L   K    Q+ V+RP  +I+ +  +LL IY         +WT+ +I
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPSIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLIIEAKDQQKHFP-PLCCCPPWT--MGEVLLFRCKLGVLQYTVVRPFTTIIALVCELLDIYDEGNFSFSNAWTYLVI 215          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184C_RAT (Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 639
            +G+ ++LT+  +M  + QHL ++  P+ QK       M PIY++DS+V L   K       ++D+ +ECYEA VI  FM  + +YL I     ++  E K ++ +H  P+    P    +    L   K    Q+ V+RPI ++  +  ++L +Y         +WT+ +I
Sbjct:   52 AGIFLLLTIPVSMCGILQHLVHYTQPELQKPIIRILWMVPIYSLDSWVALKYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLMLHLEAKDQQ-NHLPPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTSLVCEILGVYDEGNFSFSNAWTYLVI 215          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG+ V   +  T   +  HL  +  P EQ+       + P+YA DS++ LL + G    + + DSV++CYEA VI  F++L + YL     ++ +  EI+G+    S        R +      L+  K  T QF +++PI +++ I LQ    Y
Sbjct:   49 SGVFVWAALVLTGHQIYLHLRSYTVPHEQRYIIRLLFIVPVYAFDSWLSLL-LLGGHQHYIYFDSVRDCYEAFVIYSFLSLCFQYLG---GESAIMAEIRGKPVRTSCFHGTCCLRGMTYSIGFLRFCKQATLQFCIVKPIMALVTIVLQAFGKY 199          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEALVI  F++L Y YL     ++ +  EI+G+    S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEALVI  F++L Y YL     ++ +  EI+G+    S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 48/171 (28.07%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 639
            +G+ ++LT+  ++ ++ QHL ++  P+ QK       M PIY++DS++ L           ++D+ +ECYEA VI  FM  + +YL       ++  E K ++ H  FP     P    +    L   K    Q+ V+RP  +I+ +  +LL IY         +WT+ +I
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPGIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKH--FPPLCCCPPWA-MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVI 215          
The following BLAST results are available for this feature:
BLAST of FC921164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
T184A_MOUSE4.745e-1430.32Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]
T184A_RAT6.197e-1430.32Transmembrane protein 184A OS=Rattus norvegicus GN... [more]
T184C_MOUSE5.246e-1329.24Transmembrane protein 184C OS=Mus musculus GN=Tmem... [more]
T184A_HUMAN5.246e-1330.32Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184C_BOVIN3.401e-1228.07Transmembrane protein 184C OS=Bos taurus GN=TMEM18... [more]
T184C_RAT7.576e-1228.65Transmembrane protein 184C OS=Rattus norvegicus GN... [more]
T184A_BOVIN1.292e-1129.68Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]
T184B_HUMAN2.204e-1128.66Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN2.204e-1128.66Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184C_PONAB2.879e-1128.07Transmembrane protein 184C OS=Pongo abelii GN=TMEM... [more]

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Properties
Property NameValue
Genbank descriptionC32101H06EF RVDevelopN Citrus clementina cDNA clone C32101H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921164 ID=FC921164; Name=FC921164; organism=Citrus clementina; type=EST; length=698bp
GAATCACAAATACAAAGACGCAGATACAAGAGTCAGTCACGAGAGACACA
GTTTGAATCACCATCATCATCGTCGTCGTCGTCGTCGTCGTGAGCGATGG
ATCTGAGCACGATGAGTCGGGCGCAAATCACATTGATGGGATCGGGATTG
TGCGTGATGCTGACAATGAATTTCACGATGCGGCTCTTGCAACAGCATCT
CTTTTACTGGAAGAATCCGAAGGAGCAGAAGGCTATCATTATCATAATCC
TTATGGCTCCCATTTACGCTGTTGATTCTTTTGTAGGTTTGTTGGATATC
AAGGGTAGCAAACCCTTCTTCACCTTTTTGGACTCCGTCAAGGAATGCTA
CGAGGCTCTGGTTATTGCTAAGTTCATGGCTTTAATGTACAGTTATTTGA
AGATTTCGATTAGTAAGAACATTGTGCCGGATGAAATTAAAGGAAGAGAG
TTTCATCATTCCTTTCCCATGACTCTTTTCCAGCCACGCACTGTCCGCCT
GGATCACCATACATTGAAGCTCCTCAAATACTGGACGTGGCAGTTTGTTG
TTATCCGCCCAATATGTTCCATATTGATGATTACACTGCAACTTCTTCGG
ATATACCCCTCTTGGTTGAGCTGGACATTTACAATCATTCTAAACGTTTC
AGTTTCATTGGCATTGTACTCTTTGGTGGTCTTCTACATGTTTTTGCA
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