FC921168

Overview
NameFC921168
Unique NameFC921168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921168 vs. ExPASy Swiss-Prot
Match: GOS11_ARATH (Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.524e-55
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:  253 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDTTENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQT*LKCRS 552
            MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQ   + RS
Sbjct:    1 MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRS 100

HSP 2 Score: 76.2554 bits (186), Expect = 4.524e-55
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  546 QEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEA 671
            QEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS +A
Sbjct:   93 QEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGSEQA 134
The following BLAST results are available for this feature:
BLAST of FC921168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GOS11_ARATH4.524e-5580.00Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC32101H10EF RVDevelopN Citrus clementina cDNA clone C32101H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921168 ID=FC921168; Name=FC921168; organism=Citrus clementina; type=EST; length=737bp
GGATTACGCAAAACGCAATCGACCGCTTTTCAAAAGTGGAAACCAAAATT
TAAAAAAAAAAAAAAAATTGACCAGTTTTNTGGTCATTTTGCCGGTGTGA
GCAGACAATCTGTCCTCGTCTCCAAACAAACGTTATTATATTTAATCAAC
CAACGTATACGAAAGAAATTGAATAAAATCACGCAATTGAATTGAAGATC
AATTTTTAATTTCATTTTTGGTTGACAGATCGATCTGGATTTGGTTTCAG
CGATGGATGTGCCTAGCTCATGGGACGCTTTACGCAAACAGGCGAGAAAG
CTGGAAGCACAGTTGGATGAGCAGATGCATTCCTATCGTAAGTTGGTTTC
CTCTAAGGGTTCTACAAAGGTTGACACCACAGAGAATGATCTTGAATCTG
GGATAGATTGGTTGCTGAAACAGCTACAACAAGTAAATATACAAATGCAA
GATTGGGTATCATCAGGAGGATCCGAAATGGTTTCACATACTTTGACTCG
TCATCAGGAAATTCTTCAAGATCTTACTCAGACATGATTGAAGTGCAGGA
GTTTTATCGTCTCCGCTCCAGCCTTAAAGCTAAGCAAGAGCATGCTTCGC
TACTTGAGGACTTTAGGGAGTTTGATCGGACCAGATTAGATTTAGAAGAT
GGTGTTGGTTCTCCAGAAGCAGCTTTTACTTAAGACACGCGTCTATTAAT
CGAGTACAGGACAGATGGATCTGTGATTCTCAGCTCA
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