FC921169

Overview
NameFC921169
Unique NameFC921169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921169 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.476e-68
Identity = 141/228 (61.84%), Postives = 163/228 (71.49%), Query Frame = 3
Query:    9 IQQFGVSAFLNNTGLCGPPLETSCSGRGKGMTPTSKNPKXXXXXXXXXXXXXXXXXXXXXXXTIMNIKARRRKRDDETMVVEGTPLGST--DSNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGSVYRASFEGGVSIAVKKLETLGRIRNQEEFELEIGRLSNIRHFNLVAFQGYYWSSTMQLILSEFVPKGNLYDNLHGVNYPGTSTGGIGNPELHW 686
            IQ FG SAF NN  LCG PL T C+ RG      S+N                           +N++AR+R++D+E + VE TPL S+   S VIIGKLVLFSK+LPSKYEDWEAGTKALLDKE +IG GSIGSVYRASFEGGVSIAVKKLETLGRIRNQEEFE EIGRL  ++H NL +FQGYY+SSTMQLILSEFVP G+LYDNLH   +PGTS+   GN +L+W
Sbjct:  474 IQAFGSSAFSNNPFLCGDPLVTPCNSRGAAAK--SRNSDALSISVIIVIIAAAVILFGVCIVLALNLRARKRRKDEEILTVETTPLASSIDSSGVIIGKLVLFSKNLPSKYEDWEAGTKALLDKENIIGMGSIGSVYRASFEGGVSIAVKKLETLGRIRNQEEFEQEIGRLGGLQHPNLSSFQGYYFSSTMQLILSEFVPNGSLYDNLHLRIFPGTSS-SYGNTDLNW 698          
BLAST of FC921169 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  195 TIMNIKARRRKRDDETMVVEGTPLGSTDS--NVIIGKLVLFSKSLP---SKYEDWEAGTKALLDKECLIGGGSIGSVYRASF-EGGVSIAVKKLETLGRIRNQEEFELEIGRLSNIRHFNLVAFQGYYWSSTMQLILSEFVPKGNLYDNLH 629
            T++N   RRR    +   +E    GS+ S  ++++GKLVL +       S  +++E   ++LL+K   IG G  G+VY+A   E G ++AVKKL     ++N E+F+ E+  L+  +H NLV+ +GY+W+  + L++SE++P GNL   LH
Sbjct:  665 TLLNASVRRRLAFVDN-ALESIFSGSSKSGRSLMMGKLVLLNSRTSRSSSSSQEFERNPESLLNKASRIGEGVFGTVYKAPLGEQGRNLAVKKLVPSPILQNLEDFDREVRILAKAKHPNLVSIKGYFWTPDLHLLVSEYIPNGNLQSKLH 814          
BLAST of FC921169 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  366 LDKECLIGGGSIGSVYRASFEGGVSIAVKKLETLGRIRNQEEFELEIGRLSNIRHFNLVAFQGYYWSSTMQLILSEFVPKGNLYDNLHGVN 638
            L+++  IG G+ G VYRAS   G   AVK+L     IR  +    EI  +  +RH NL+  +G++      L+L  ++PKG+LYD LHGV+
Sbjct:  827 LNEKYTIGRGAHGIVYRASLGSGKVYAVKRLVFASHIRANQSMMREIDTIGKVRHRNLIKLEGFWLRKDDGLMLYRYMPKGSLYDVLHGVS 917          
The following BLAST results are available for this feature:
BLAST of FC921169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y1124_ARATH2.476e-6861.84Probable LRR receptor-like serine/threonine-protei... [more]
Y3804_ARATH1.989e-1735.76Probably inactive leucine-rich repeat receptor-lik... [more]
PEPR1_ARATH2.782e-1139.56Leucine-rich repeat receptor-like protein kinase P... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32101H11EF RVDevelopN Citrus clementina cDNA clone C32101H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921169 ID=FC921169; Name=FC921169; organism=Citrus clementina; type=EST; length=687bp
CCGGGACCATACAACAGTTTGGTGTATCAGCATTTTTAAACAATACTGGA
CTCTGTGGTCCTCCTTTGGAGACTTCCTGCTCAGGAAGAGGCAAGGGTAT
GACACCAACATCAAAGAATCCAAAAGTTCTTAGTGTTTCAGCTATTGTTG
CAATTGTCGCAGCAGCATTGATCCTTGCTGGGGTTTGTGTGGTAACCATC
ATGAACATCAAGGCACGCAGGAGGAAGAGGGATGATGAGACGATGGTTGT
TGAGGGCACACCACTGGGTTCAACGGATTCAAATGTTATAATTGGGAAGT
TGGTTCTCTTCAGTAAGAGTCTGCCTTCAAAGTATGAAGATTGGGAGGCT
GGCACCAAAGCATTACTTGACAAGGAGTGCCTCATAGGTGGTGGCTCAAT
AGGATCTGTATATAGAGCCAGCTTCGAAGGTGGGGTTTCAATTGCAGTAA
AAAAGCTGGAGACATTAGGAAGGATTAGAAACCAAGAAGAATTTGAGCTA
GAAATTGGACGGTTAAGCAACATTCGACACTTCAACTTGGTAGCATTTCA
AGGTTACTATTGGTCCTCGACAATGCAGTTGATTCTGTCTGAATTTGTTC
CAAAAGGAAATTTGTATGATAATCTACATGGGGTTAATTATCCAGGTACC
AGTACTGGTGGTATTGGCAACCCTGAACTGCACTGGT
back to top