FC921174

Overview
NameFC921174
Unique NameFC921174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921174_ssr204 microsatellite FC921174_ssr204:204..223. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC921174 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.376e-43
Identity = 85/127 (66.93%), Postives = 105/127 (82.68%), Query Frame = 3
Query:  312 MSCFGCCEEDDIRKASKNGPFVPNNPAGNPGGFYVKEAPAKEMKTVTVQPIAVTVISVDELKEKTDNFGTNSLIGEGSYGRVYFGVLRSGRAAAIKKLDSGKQPDQEFLAQVSMVSRLKNEMLLSLL 692
            MSCF CC++DD+ +A+ NGPF+ +N AGN GG    E+  +E +TV +QPIAV  I+VDELK+ TDNFG+ +LIGEGSYGRVY GVL+SGRAAAIKKLDS KQPD+EFLAQVSMVSRLK+E ++ LL
Sbjct:    1 MSCFSCCDDDDMHRATDNGPFMAHNSAGNNGGQRATESAQRETQTVNIQPIAVPSIAVDELKDITDNFGSKALIGEGSYGRVYHGVLKSGRAAAIKKLDSSKQPDREFLAQVSMVSRLKDENVVELL 127          
BLAST of FC921174 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.711e-30
Identity = 74/135 (54.81%), Postives = 88/135 (65.19%), Query Frame = 3
Query:  312 MSCFGCC-EEDDIRKASKNGP-------FVPNNPAGNPGGFYVKEAPAKEMKTVTVQPIAVTVISVDELKEKTDNFGTNSLIGEGSYGRVYFGVLRSGRAAAIKKLDSGKQPDQEFLAQVSMVSRLKNEMLLSLL 692
            MSCFGCC E+DD+ K +  G        F P N A +       E   K    V +QPI V +I   ELKE TD+FG+NSLIGEGSYGRVY+GVL +   +AIKKLDS KQPD EFLAQVSMVSRLK++  + LL
Sbjct:    1 MSCFGCCGEDDDMHKTADYGGRHNQAKHFPPGNDARH---HQASETAQKGPPVVKLQPIEVPIIPFSELKEATDDFGSNSLIGEGSYGRVYYGVLNNDLPSAIKKLDSNKQPDNEFLAQVSMVSRLKHDNFVQLL 132          
BLAST of FC921174 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 59/141 (41.84%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  312 MSCFGCCEEDDIRKASKNGPFVPNNPAGNP--GGFYVKE----------APAKEMKTVTVQPIAVTVISVDELKEKTDNFGTNSLIGEGSYGRVYFGVLRSGRAAAIKKLD--SGKQPDQEFLAQVSMVSRLKNEMLLSLL 692
            M C G  +E+     + N    P N AGNP  GG    E          APAK      V PI +  +++DEL     NFG  +LIGEGSYGRV+ G  + G A AIKKLD  S ++PD +F +Q+S+VSRLK++  + LL
Sbjct:    1 MFCCGGADEEPAGPPA-NQYAAPPNKAGNPNFGGGNRGEPRNPNAPRSGAPAK------VLPIEIPSVALDELNRMAGNFGNKALIGEGSYGRVFCGKFK-GEAVAIKKLDASSSEEPDSDFTSQLSVVSRLKHDHFVELL 133          
The following BLAST results are available for this feature:
BLAST of FC921174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PTI1_SOLLC2.376e-4366.93Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
Y2706_ARATH6.711e-3054.81Probable receptor-like protein kinase At2g47060 OS... [more]
Y2197_ARATH1.605e-1541.84Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32102A05EF RVDevelopN Citrus clementina cDNA clone C32102A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921174 ID=FC921174; Name=FC921174; organism=Citrus clementina; type=EST; length=734bp
AAACGCGGAATTTTCGTTTTGGTTCTCTATGTAACGTCGGAAGCAAGTAC
AAAAGAGAGTAATGAGTCGGAGACAAATTTCAAAGCTTTGCCAAGAAGCT
ATAGGGACAATTTCCTGCCAATTTGACAAATTTGCAAGGCATCTTCCTAT
CTCTTTTCAATCAACTGAACTTTCTCTCTAATTTCTCCAAGTCGAACCAA
CGCCTCTCTCTCTCTCTCTCTCTGTGAATCTGATCATCTTGTGCACTTCA
GCCACCCCTTAAATCACGACCAAAATCGTCCTCTTCATTGCGAGACTGAG
GAGAAACTATCATGAGCTGCTTTGGTTGTTGTGAAGAAGATGATATCCGT
AAAGCTTCTAAAAACGGACCATTTGTGCCAAATAACCCAGCCGGTAACCC
TGGAGGTTTTTACGTGAAAGAAGCTCCAGCAAAAGAAATGAAAACCGTAA
CTGTTCAACCTATAGCTGTCACTGTCATTTCAGTGGACGAGCTGAAGGAG
AAAACGGATAATTTTGGTACAAATTCTTTGATTGGTGAGGGTTCATATGG
AAGAGTGTATTTTGGTGTTCTAAGAAGTGGGCGTGCTGCAGCCATCAAGA
AGCTCGATTCCGGTAAGCAACCGGACCAAGAATTTCTAGCACAGGTCTCC
ATGGTATCAAGACTTAAGAATGAAATGTTGTTGAGCTTGTTGGTTATTAT
GTGATGGGACTCTCGTGTGCTTGCTATGACATGC
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