FC921178

Overview
NameFC921178
Unique NameFC921178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921178 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  425 QALKQLPREKMQVATKFXXXXXXXXXXXXXXX----PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKISTLDYLRQPGTL--GDNAVHP 727
            +ALK   RE++ +ATKF                   P YVR+ CEASLKRLD+D IDLYYQHRVDT VPIE T+GE+KKLVEEGK+  +       +     +AVHP
Sbjct:   75 KALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHP 181          
BLAST of FC921178 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  425 QALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKISTLDYLRQPGTL--GDNAVHP 727
            +AL+   REK+++ATKF               P YVR+ CE S KRL VD IDLYYQHR+D  VPIE TIGE+KKLVEEGKI  +       +     +AVHP
Sbjct:   75 KALQGGVREKVELATKFGVSFADGKREIHGD-PAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHP 176          
The following BLAST results are available for this feature:
BLAST of FC921178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
A115_TOBAC7.577e-1849.53Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE1.429e-1649.51IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC32102A09EF RVDevelopN Citrus clementina cDNA clone C32102A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921178 ID=FC921178; Name=FC921178; organism=Citrus clementina; type=EST; length=728bp
AGAAGAGGATGGCATATCAATGATAAAGCATGCTTTCAGTAAAGGAATCA
CTTTCTTTGATACTGCTGATGTGTACGGACAAAATGCTAATGAAGTTCTT
CTTGGAAAGGTTATGGTTTTCTGTTGCAATTTTCTTAACAACGTTTCTGT
ATGATAAATTTAATTATATACAATTCACACATAGATCAAGTGGTAACTTA
AGGAGTATGATGGTTACTAAGATTCGAGAAATTTTTCTTATAACTCGTTG
ACAATACAAGGATCACAATACTAATAATGAAATATTTTATGCTAATAATG
AAATATTTTTGTTAAGGGAATTGGTAAATAGCTACTTTTGGGTACTATTG
TGGATATCATAGGATGGAAATCATTATCAGAATATTGTGAATTTATTGGA
AAAATAATTCACTCCTTTTCATTTCAGGCCTTGAAGCAGTTGCCTAGAGA
AAAGATGCAAGTAGCAACAAAGTTTGGGATTGCAGGAATAGGAGTTGCTG
GTGTGATCGTGAAGGGTGCCCCTGATTATGTGCGCTCGTGTTGTGAAGCT
AGCTTGAAGCGCCTTGATGTGGATTACATTGATCTATATTATCAACATAG
AGTGGACACATCAGTCCCCATAGAGGAAACCATTGGCGAAATGAAGAAGC
TGGTGGAAGAGGGTAAAATCAGTACATTGGATTATCTGAGGCAGCCAGGC
ACATTAGGAGACAATGCTGTTCATCCAT
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