FC921246
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16 Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 604 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E K +C + ISWNP Sbjct: 19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNP 172
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 53/167 (31.74%), Postives = 79/167 (47.31%), Query Frame = 2 Query: 119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 604 S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V+VYE D + L W LQ E V+ SC ISWNP Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNP 172 The following BLAST results are available for this feature:
BLAST of FC921246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921246 ID=FC921246; Name=FC921246; organism=Citrus clementina; type=EST; length=669bpback to top |