FC921246

Overview
NameFC921246
Unique NameFC921246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15451 contig Ccv1_Contig15451:6..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 604
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K +C  + ISWNP
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNP 172          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGXNQGSSFVLG 643
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of FC921246 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 53/167 (31.74%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  119 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 604
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VYE  D + L  W LQ E       V+     SC    ISWNP
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNP 172          
The following BLAST results are available for this feature:
BLAST of FC921246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_OSMMO7.921e-1630.00Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_XENTR3.010e-1529.44Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_PONAB3.010e-1529.44Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN3.010e-1529.44Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_DANRE3.010e-1531.14Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_BOVIN3.010e-1529.44Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1B_XENLA3.010e-1529.44Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA3.010e-1529.44Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_MOUSE1.494e-1431.74Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC32102G12EF RVDevelopN Citrus clementina cDNA clone C32102G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921246 ID=FC921246; Name=FC921246; organism=Citrus clementina; type=EST; length=669bp
GGAAAAAGCAGTAGTTCACTGCGAGCGTGCGGTCTCCTCTCATCTGTGCT
GTTGAAATTCACGGTTCACGGACATGGACAAAGCAGTTGCGACTCTTGAC
AAAGGCACAACGAGCTCCTCGTGGAACTACTGTGGCCAGAGATTAGCCAC
TGGTTCAACCGACGGCACTCTCTCCATCTTTGACTCACCTGACCCCTCTT
CTTCCTCATTCACCTGCAACCTCAAAACTAAGGTACATGCGGGTGCCATT
TTAAAGGTTGTTTGGGTGCCACCGGAGTTCGGTGACGCGGTTGCCTGTAT
TTGCTCGGATGGAAGTTTGTTGTTGTGGGAAGAGATTGTTGAAGATGCAC
AGCCTCTGCAGTGGAAGCTCTGTAAGAGCTTTGAAAGCACTTCGACTCAA
GTGTTAGATGTTCAATTTGGAGTCTCTTCCACAAGTTTGAAATTGGTTGC
TGCATACTCAGATGGCCATGTTAAAGTTTATGAGCTCCTAGATCCCTTGA
TACTGAAAAATTGGCAACTTCAGGCTGAATTTCAGAATGCTATTGATTCT
GTGACTATGTTTAGGAAGGCTTCATGCATATCGGCATCCATTTCTTGGAA
TCCACAGAAGGGTNGAAACCAGGGATCTAGTTTTGTTCTCGGGTTCATTC
AGACACACCACACTCAATT
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