FC921247

Overview
NameFC921247
Unique NameFC921247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10475 contig Ccv1_Contig10475:88..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: FIE_ARATH (Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 3.137e-87
Identity = 148/197 (75.13%), Postives = 174/197 (88.32%), Query Frame = 3
Query:   81 MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDT 671
            M++  +G E +VGSLTPS K+ Y+VTN++QEGK+PLYAVVFNF+D+R+F+VF T GGNR+T+Y CL  G I+ALQSY DEDKEESFYTVSWAC V+G P+  AGG+ GIIRVIDV++E +HKS VGHGDS+NEIRTQPLKP LV++ASKDESVRLWNV+TGICILIFAGAGGHR EVLSVDFHPSDIYR ASCGMDT
Sbjct:    1 MSKITLGNESIVGSLTPSNKKSYKVTNRIQEGKKPLYAVVFNFLDARFFDVFVTAGGNRITLYNCLGDGAISALQSYADEDKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETIHKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMDT 197          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: FIE2_MAIZE (Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81
Identity = 147/192 (76.56%), Postives = 164/192 (85.42%), Query Frame = 3
Query:   96 IGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 668
            +GCE   GSL PS+KREY+   K  EGKRPLYA+ FNF+D+RY++VFATVGGNRVT Y+CLE G  A LQ+YVDEDK+ESFYT+SWA + VDG P  VA G NGIIRVI+ + EKL KSFVGHGDSINEIRTQPLKPSL++SASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSDI R ASCGMD
Sbjct:   10 LGCEAAEGSLVPSRKREYKPCGKHTEGKRPLYAIGFNFMDARYYDVFATVGGNRVTTYRCLENGSFALLQAYVDEDKDESFYTLSWARDHVDGSPLLVAAGSNGIIRVINCATEKLAKSFVGHGDSINEIRTQPLKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIERFASCGMD 201          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: FIE1_MAIZE (Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 121/200 (60.50%), Postives = 149/200 (74.50%), Query Frame = 3
Query:   72 VRRMARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 668
            V  + R  +GCE + G L PS+KREY+  +K   G  P+YA+ FNFID RY++VFA    N V +Y+CLE G    LQ+YVDEDK+ESFYT+SW  + VD  P  VA G N IIRVI+ + EKL KS VGHG SI+EIRT   KPSL++SASKDES+RLWNV TGICIL+FAGAGGHR++VLSVDFHP+++   ASCGMD
Sbjct:   60 VNIVPRQGLGCEVVEGLLVPSRKREYKPNSKYTVGNHPIYAIGFNFIDMRYYDVFAIASCNSVIIYRCLENGGFGLLQNYVDEDKDESFYTLSWTIDQVDSSPLLVAAGSNRIIRVINCATEKLDKSLVGHGGSIHEIRTHASKPSLIISASKDESIRLWNVHTGICILVFAGAGGHRHDVLSVDFHPTEVGIFASCGMD 259          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EED_DANRE (Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 82/182 (45.05%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  138 KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI-PFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  +     P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS DF   D+   +I SCGMD
Sbjct:   81 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTFDCSSSHPLLAVAGSRGIIRIINHITMQCVKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADF---DLLGEKIMSCGMD 259          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EED_MOUSE (Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct:   79 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 257          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EED_HUMAN (Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct:   79 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 257          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EED_BOVIN (Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct:   79 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 257          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EED_XENTR (Polycomb protein eed OS=Xenopus tropicalis GN=eed PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct:   76 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 254          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EED_CHICK (Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  138 KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct:   84 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 262          
BLAST of FC921247 vs. ExPASy Swiss-Prot
Match: EEDB_XENLA (Polycomb protein eed-B OS=Xenopus laevis GN=eed-B PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 668
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD
Sbjct:   76 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 254          
The following BLAST results are available for this feature:
BLAST of FC921247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FIE_ARATH3.137e-8775.13Polycomb group protein FERTILIZATION-INDEPENDENT E... [more]
FIE2_MAIZE7.484e-8176.56Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE... [more]
FIE1_MAIZE1.515e-6560.50Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE... [more]
EED_DANRE6.208e-3545.05Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV... [more]
EED_MOUSE1.059e-3444.51Polycomb protein EED OS=Mus musculus GN=Eed PE=1 S... [more]
EED_HUMAN1.059e-3444.51Polycomb protein EED OS=Homo sapiens GN=EED PE=1 S... [more]
EED_BOVIN1.059e-3444.51Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=... [more]
EED_XENTR1.383e-3444.51Polycomb protein eed OS=Xenopus tropicalis GN=eed ... [more]
EED_CHICK1.383e-3444.51Polycomb protein EED OS=Gallus gallus GN=EED PE=2 ... [more]
EEDB_XENLA1.806e-3444.51Polycomb protein eed-B OS=Xenopus laevis GN=eed-B ... [more]

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Properties
Property NameValue
Genbank descriptionC32102H01EF RVDevelopN Citrus clementina cDNA clone C32102H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921247 ID=FC921247; Name=FC921247; organism=Citrus clementina; type=EST; length=691bp
GATCCCCAGAATACATCGACGAAACGCTTCAGTGGTTTTCTTGCATAGGT
TACGCAGTGACGGGTGCTAACGTGCGCAGGATGGCGAGGACTGCGATCGG
CTGCGAGCCACTGGTAGGATCACTAACGCCGTCGAAAAAACGCGAGTACA
GAGTCACTAATAAGCTCCAAGAAGGCAAGCGTCCTCTGTACGCCGTCGTT
TTCAACTTCATCGACTCCCGCTACTTCAACGTCTTCGCCACCGTCGGTGG
AAATCGCGTAACTGTATACCAATGTCTTGAGGGGGGTGTTATTGCAGCAT
TGCAGTCTTATGTTGATGAAGATAAGGAAGAGTCATTTTATACTGTGAGC
TGGGCTTGCAATGTGGATGGGATCCCCTTCTCAGTGGCAGGAGGCATCAA
TGGTATCATCCGAGTAATTGATGTCAGTAATGAGAAACTTCACAAGAGTT
TTGTTGGCCATGGGGATTCAATAAATGAAATCAGGACCCAGCCACTGAAA
CCCTCACTTGTGGTGTCTGCAAGCAAAGATGAATCAGTTCGTCTCTGGAA
TGTGCAAACTGGAATATGCATTTTGATATTTGCTGGTGCTGGGGGTCACC
GTAATGAAGTTTTGAGCGTGGACTTTCATCCTTCAGATATCTATCGCATT
GCAAGTTGTGGCATGGACACACTGTCAAGATTTGGTCAATG
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