FC921249

Overview
NameFC921249
Unique NameFC921249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.023e-91
Identity = 162/208 (77.88%), Postives = 186/208 (89.42%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATLL 624
            VVG+IIPWNFP+ MF  KV+PA+AAGCTM+VKPAEQT L AL++AHL+K AG+PDGVLN+V GFG TAGAAIASHMD+DKVSFTGSTDVGR++MQAAA SNLK VSLELGGKSPLLIF+D D++ AAD+ALLG  +NKGEICVASSRV+VQEGIYD+  +KLVEKAK W VGDPFD   RQGPQVDK+QF++ILSYIEHGK EGATLL
Sbjct:  161 VVGNIIPWNFPSIMFATKVAPAMAAGCTMVVKPAEQTSLSALFYAHLSKEAGIPDGVLNIVTGFGSTAGAAIASHMDVDKVSFTGSTDVGRKIMQAAAASNLKKVSLELGGKSPLLIFNDADIDKAADLALLGCFYNKGEICVASSRVFVQEGIYDKVVEKLVEKAKDWTVGDPFDSTARQGPQVDKRQFEKILSYIEHGKNEGATLL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.698e-70
Identity = 124/207 (59.90%), Postives = 162/207 (78.26%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K++PAL  G T++VKPAEQTPL ALY   L K AG P GV+N+VPGFGPTAGAAI+ HMDIDKVSFTGST+VG+ + +AA  +NLK V+LELGGKSP +IF D D++ AA+ A +G+ +++G+ C+A SR++V+E IYDEF ++ +E+AK + +GDP  P V+QGPQ+DK+QF +IL  IE GK+EGA L
Sbjct:  170 VCGQIIPWNFPLVMFIWKIAPALCCGNTVVVKPAEQTPLSALYMGSLIKEAGFPPGVVNIVPGFGPTAGAAISHHMDIDKVSFTGSTEVGKLIKEAAGKTNLKRVTLELGGKSPNIIFADADLDEAAEFAHIGLFYHQGQCCIAGSRIFVEEPIYDEFVRRSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKL 376          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 264.233 bits (674), Expect = 3.782e-70
Identity = 122/207 (58.94%), Postives = 162/207 (78.26%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K+ PAL+ G T++VKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAGAAI+SHMD+DKV+FTGST VG+ + +AA  SNLK V+LELGGKSP ++F D D++ A + A  G+ +++G+ CVA+SR++V+E +YDEF K+ VE+AK +V+G+P  P + QGPQ+DK+Q D+IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQHDKILDLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 6.451e-70
Identity = 121/207 (58.45%), Postives = 163/207 (78.74%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K+ PAL+ G T++VKPAEQTPL AL+   L K AG P GV+N+VPG+GPTAGAAI+SHMD+DKV+FTGST+VG+ + +AA  SNLK VSLELGGKSP ++F D D++ A + A  G+ +++G+ C+A+SR++V+E IYDEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+++IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 6.451e-70
Identity = 121/207 (58.45%), Postives = 163/207 (78.74%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K+ PAL+ G T++VKPAEQTPL AL+   L K AG P GV+N+VPG+GPTAGAAI+SHMD+DKV+FTGST+VG+ + +AA  SNLK VSLELGGKSP ++F D D++ A + A  G+ +++G+ C+A+SR++V+E IYDEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+++IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.437e-69
Identity = 122/207 (58.94%), Postives = 164/207 (79.23%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G I+PWNFP  MF  K++PAL+ G T++VKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAGAAI+SHMDIDKV+FTGST+VG+ + +AA  SNLK V+LELGGKSP ++F D D+ TA ++    + +++G+ CVA+SR++V+E IYDEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+D+IL  IE GK+EGA L
Sbjct:  161 VCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPAEQTPLSALHVATLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPFIVFADADLETALEVTHQALFYHQGQCCVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKILDLIESGKKEGAKL 367          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.452e-69
Identity = 122/207 (58.94%), Postives = 163/207 (78.74%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  M   K+ PAL+ G T+IVKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAGAAI+SHMDIDKV+FTGST+VG+ + +AA  SNLK V+LELGGKSP ++F D D++ A + A  G+ +++G+ C+A+SR++V+E IYDEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+++IL  IE GK+EGA L
Sbjct:  157 VCGQIIPWNFPLVMLIWKIGPALSCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLAPEVNQGPQIDKEQYNKILDLIESGKKEGAKL 363          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 3.202e-69
Identity = 121/207 (58.45%), Postives = 161/207 (77.78%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K+ PAL+ G T++VKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAGAAI+SHMD+DKV+FTGST VG+ + +AA  SNLK V+LELGGKSP ++F D D++ A + A  G+ +++G+ CVA+SR++V+E +YDEF +K VE+AK +V+G+P    + QGPQ+DK+Q D+IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVRKSVERAKKYVLGNPLTQGINQGPQIDKEQHDKILDLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.202e-69
Identity = 120/207 (57.97%), Postives = 162/207 (78.26%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  M   K+ PAL+ G T++VKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAGAAI+SHMDIDKV+FTGST+VG+ + +AA  SNLK V+LELGGKSP ++  D D++ A + A  G+ +++G+ C+A+SR++V+E IYDEF ++ VE+AK +++G+P  P V QGPQ+DK+Q+D+IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 9.316e-69
Identity = 119/207 (57.49%), Postives = 161/207 (77.78%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  M   K+ PAL+ G T++VKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAGAAI+SHMDIDKV+FTGST+VG+ + +AA  SNLK V+LELGGKSP ++  D D++ A + A  G+ +++G+ C+A+SR++V+E IYDEF ++ VE+AK +++G+P  P   QGPQ+DK+Q+D+IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGATQGPQIDKEQYDKILDLIESGKKEGAKL 368          
The following BLAST results are available for this feature:
BLAST of FC921249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL2C4_ARATH1.023e-9177.88Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL1A1_CHICK1.698e-7059.90Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_MOUSE3.782e-7058.94Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_SHEEP6.451e-7058.45Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN6.451e-7058.45Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_HORSE1.437e-6958.94Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_RABIT2.452e-6958.94Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL1A1_RAT3.202e-6958.45Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_HUMAN3.202e-6957.97Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_MACFA9.316e-6957.49Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32102H03EF RVDevelopN Citrus clementina cDNA clone C32102H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921249 ID=FC921249; Name=FC921249; organism=Citrus clementina; type=EST; length=626bp
GTTGTTGGACACATCATTCCCTGGAATTTTCCTACCACCATGTTTTTCAT
GAAGGTTAGCCCTGCGTTAGCCGCTGGGTGCACAATGATTGTCAAGCCTG
CTGAGCAAACTCCCCTTATTGCTCTTTATTTTGCCCATCTTGCCAAGCTG
GCTGGAGTACCTGATGGAGTGCTTAATGTTGTACCTGGATTTGGACCAAC
TGCTGGTGCTGCCATCGCCTCCCATATGGACATTGATAAAGTTAGTTTTA
CAGGGTCTACGGATGTCGGACGTCAAGTGATGCAGGCCGCAGCAACAAGC
AACTTGAAGCCAGTTTCACTAGAATTAGGTGGCAAGTCGCCTCTCTTGAT
TTTTGATGATGTTGATGTAAACACAGCTGCAGACATGGCGCTTCTGGGCA
TCCTGTTTAACAAGGGAGAAATTTGTGTGGCAAGTTCTCGTGTTTATGTC
CAGGAAGGAATTTATGATGAATTTGAAAAGAAGTTGGTCGAAAAGGCAAA
AGCTTGGGTAGTTGGTGATCCTTTTGATCCTGCAGTTCGTCAAGGACCCC
AGGTCGATAAGAAGCAGTTCGATAGAATTCTTTCGTACATTGAGCATGGC
AAGAGGGAAGGAGCCACATTGTTAAC
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