FC921253

Overview
NameFC921253
Unique NameFC921253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921253_ssr5 microsatellite FC921253_ssr5:5..22. BLAST: Citrus ESTs to Prunus persica proteins V1
FC921253_ssr49 microsatellite FC921253_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14274 contig Ccv1_Contig14274:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921253 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  311 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLK 622
            +K FV GG+A +++   THP+D +KVRMQLQGE                        P+ G + + V I Q EG   L+ G+SA++LRQ  Y+TTR GLYD++K
Sbjct:   25 LKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEG-------------------TGVGPKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIK 109          
BLAST of FC921253 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  314 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNM 655
            K F+ GG+ASI A C T P+DL K R+Q+QG+          A  A    +        G +   VRI ++EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D PE   +
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ----------ANDAKYKEIRYR-----GMLHAIVRIWKEEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDETL 106          
BLAST of FC921253 vs. ExPASy Swiss-Prot
Match: KMCP1_XENLA (Kidney mitochondrial carrier protein 1 OS=Xenopus laevis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  314 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNM 655
            K F+ GG+ASI A C T P+DL K R+Q+QG+      +  + +     A+              VRI ++EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D PE   +
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQPNDAKYKE-IRYRGMMHAI--------------VRIWREEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDETL 106          
BLAST of FC921253 vs. ExPASy Swiss-Prot
Match: KMCP1_HUMAN (Kidney mitochondrial carrier protein 1 OS=Homo sapiens GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  314 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNMP 658
            K FV GG+ASI A C T P+DL K R+Q+QG+      +  + +     A+              VRI ++EG+ AL+SG++  +LRQ  Y T ++G Y  LK+ + + PE   +P
Sbjct:    7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTNDAKFK-EIRYRGMLHAL--------------VRIGREEGLKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFIERPEDETLP 107          
BLAST of FC921253 vs. ExPASy Swiss-Prot
Match: KMCP1_MACFA (Kidney mitochondrial carrier protein 1 OS=Macaca fascicularis GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  314 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNM 655
            K FV GG+ASI A C T P+DL K R+Q+QG+      +  + +     A+              VRI ++EG+ AL+SG++  +LRQ+ Y T ++G Y  LK+ + + PE   +
Sbjct:    7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTNDAKFK-EIRYRGMLHAL--------------VRIGREEGLKALYSGIAPAMLRQSSYGTIKIGTYQSLKRLFVERPEDETL 106          
The following BLAST results are available for this feature:
BLAST of FC921253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
M2OM_DICDI1.788e-1340.38Probable mitochondrial 2-oxoglutarate/malate carri... [more]
KMCP1_XENTR1.674e-1137.39Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_XENLA1.674e-1135.65Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_HUMAN1.674e-1135.34Kidney mitochondrial carrier protein 1 OS=Homo sap... [more]
KMCP1_MACFA6.359e-1134.78Kidney mitochondrial carrier protein 1 OS=Macaca f... [more]
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Properties
Property NameValue
Genbank descriptionC32102H07EF RVDevelopN Citrus clementina cDNA clone C32102H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921253 ID=FC921253; Name=FC921253; organism=Citrus clementina; type=EST; length=696bp
GAGCCTCTCTCTCTCTCTCTCTAAAAAAAGAAAAGAAAGAAAAGGCTCCT
TCTTCTTCTTTCTTATTATCACATTGTAGCCGGCATATGTCTCATAGACC
CATCGTCCCTCATTCTTCCTCCATAGCTTTTGGCCTTCATTCTCATCTCC
TGGTCTCCAGTGAGATGAGCTCCAATACCGACTGGTAACAACAACGCAAC
TTACAATTTTCACTGACCCACAAATTAATTCGATCTAACATTATTTTTCA
TTAAATTGATCATTTCTTCTTGATTCGTTTTCTGAAAACAAAAAAAGAAT
TAAAATGGGTGTGAAAGGCTTTGTTGAAGGCGGCATTGCTTCTATTGTTG
CTGGATGTTCAACGCATCCCCTTGACCTAATCAAGGTCCGCATGCAACTC
CAGGGCGAAAACCAGGTTCCGTCTATGCGTCCCGCTCTCGCTTTCCATGC
CAACTCCTCCGCCGTCCACGTGTCTGCGCCACCCCGCCTGGGTCCCGTCG
GCGTCGGCGTCCGTATTATTCAACAAGAAGGAGTTTCGGCTCTCTTTTCC
GGGGTCTCCGCCACGGTGCTCCGCCAGACCTTGTACTCCACCACGCGGAT
GGGTCTCTACGACGTTCTCAAGCAAAAGTGGACTGACCCGGAAACCCGGA
ACATGCCGNCTCGTGCGTAGATAGCCGCCGGGTTAATTGCTGGTGG
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