FC921254

Overview
NameFC921254
Unique NameFC921254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14275 contig Ccv1_Contig14275:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 44/100 (44.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  401 FPGGRVAFTPNMRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAIKMMTL 700
            FPG    F   + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+ RQGRISFY+T  GEEG H+ SAAA++   L
Sbjct:   50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDL 149          
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  401 FPGGRVAFTPNMRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAI 685
            FPG    F   + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+ RQGRISFY+T  GEEG H+ SAAA+
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 148          
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  401 FPGGRVAFTPNMRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAI 685
            FPG    F   + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+ RQGRISFY+T  GEEG H+ SAAA+
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 148          
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  401 FPGGRVAFTPNMRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAI 685
            FPG    F   + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+ RQGRISFY+T  GEEG H+ SAAA+
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 148          
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  401 FPGGRVAFTPNMRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAIKMMTL 700
            FPG    F   + FI  +    IP YRV+D  GQ    S    + +   +K Y  M  L TMD I YE+ R+GRISFY+T  GEEG H+ SAAA++   L
Sbjct:   51 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDL 150          
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 43/95 (45.26%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  401 FPGGRVAFTPNMRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAI 685
            FPG    F   + FI  +    IP YRV+D  GQ    S    + +   +K Y  M  L TMD I YE+ RQGRISFY+T  GEEG H+ SAAA+
Sbjct:   64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 158          
BLAST of FC921254 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  467 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAXRQGRISFYLTTSGEEGYHIASAAAIKM 691
            IPCY ++D +G   +P  D +F K      IKMY  M+TL  MD+I Y+  RQGRISFY+T+ GEE  HI SAAA++M
Sbjct:   64 IPCYTIMDQEGVVSKPDQDPNFSKEE---VIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSFGEEAIHIGSAAALEM 138          
The following BLAST results are available for this feature:
BLAST of FC921254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ODBA_RAT1.357e-1644.002-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR3.947e-1645.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA3.947e-1645.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN3.947e-1645.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE5.155e-1643.002-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN5.155e-1645.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_DICDI3.694e-1451.282-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
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Properties
Property NameValue
Genbank descriptionC32102H08EF RVDevelopN Citrus clementina cDNA clone C32102H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921254 ID=FC921254; Name=FC921254; organism=Citrus clementina; type=EST; length=705bp
GAAACATCAAGGTTGCTTATCCCAACTGAAAATACAAATCCAGAACCAAT
TTCAGTTCAGTTTCTGAAAACTCATATATCATTGCATCATTTGCAGCATC
ATCTCTTATTGATTCATGGCTCTAAGTCTCGGAATGAAAAATTCAAACAA
AATTCTTAGCCAAATGAAGTCAAAGGTGGGCTTATTGTCTTTGATCAAGC
AGAGTTCTTGCACTTGTTCTATGAACAGCCATTACAGCAAGACTCCATTG
ACAGCAGCTCCATTTACTTGAGCTTTCAAATCCCCAGATTCAAATTTTCG
TTTTTCGCCAACCCTTTTCTTGGCTCGTCGTTTTGAGTCCATCAAAGCTG
GAAAGCAGTTGGATTCTTTCGGTAGTTCTGTTAATAATCAGTTTTTAGAT
TTTCCGGGAGGAAGGGTTGCATTCACCCCTAATATGAGGTTTATTTCTGA
ATCCTCTGAGGAGAGAATACCCTGCTACCGGGTGCTCGATGATGATGGTC
AACCATTTCCAGATAGCAGTTTTGTGAAGGTCAGTGAGGGAGTTGCCATT
AAAATGTACAATGATATGGTCACCCTTCAAACAATGGACACAATCTTCTA
TGAAGCACANAGGCAGGGAAGAATTTCCTTCTATCTCACCACAAGTGGAG
AAGAAGGCTATCACATTGCATCAGCTGCAGCAATAAAAATGATGACTTTG
TCGTC
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