FC921256
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2) HSP 1 Score: 338.191 bits (866), Expect = 2.523e-92 Identity = 166/195 (85.13%), Postives = 179/195 (91.79%), Query Frame = 1 Query: 109 MDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693 MDL ++ APHSMGTTIIGVTYNGGVVLGADSRTSTG+YVANR SDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEGGKIYG+PLGGT++EQPFAI YLYGFFDQAWK+ MTKEEAEQLVVKAVSLAIARDGASGGVVRTV IN Sbjct: 1 MDLNLD---APHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIIN 192
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 335.88 bits (860), Expect = 1.252e-91 Identity = 165/189 (87.30%), Postives = 175/189 (92.59%), Query Frame = 1 Query: 127 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693 D + PHSMGTTIIGVTYNGGVVLGADSRTSTG+YVANR SDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEGGKIYG+P GGT++EQPFAI YLYGFFDQAWKEGMT+EEAE+LVV AVSLAIARDGASGGVVRTVTIN Sbjct: 5 DVDQPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTIN 193
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53 Identity = 95/182 (52.20%), Postives = 136/182 (74.73%), Query Frame = 1 Query: 148 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693 +GT+I+ V Y+GGV++GADSRT+TG Y+ANRV++KIT + + +Y CRSGSAAD+Q +SDYVRY+L HT +L VK AA+L +LL Y+NKN L G+IV GWDK++GG +Y + LGG++++QPFAI Y+YG+ D +K MTK+E + V +++LA+ RDG+SGGV+R I+ Sbjct: 13 LGTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIID 194
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.685e-51 Identity = 95/186 (51.08%), Postives = 130/186 (69.89%), Query Frame = 1 Query: 133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 N S GTTI+ V ++GGVVLGADSRT+TG Y+ANRV+DK+T + D ++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y VP+GG ++ QPFAI Y+YG+ D ++EGMTKEE Q A++LA+ RDG+SGGV+R I Sbjct: 28 NREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAI 213
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 199.519 bits (506), Expect = 1.400e-50 Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 1 Query: 133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 N S GTTI+ V +NGGVVLGADSRT+TG Y+ANRV+DK+T + D+++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y VP+GG ++ Q FAI Y+YG+ D ++EGMTK+E Q A++LA+ RDG+SGGV+R I Sbjct: 27 NREVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAI 212
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.829e-50 Identity = 93/182 (51.10%), Postives = 129/182 (70.88%), Query Frame = 1 Query: 148 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693 MGTTI + Y GV+L ADSRT+ G Y+ANRV+DK+TQLTDN++ CRSGSAAD+QTV+D ++Y+L + IQ G +V AA L + Y NKN L G+IV G+D+ GG +Y +PLGG++ +QP AI ++YGF D ++E MT+EEA + + AV+LA+ RDG+SGG +R V +N Sbjct: 23 MGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILN 204
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50 Identity = 93/182 (51.10%), Postives = 128/182 (70.33%), Query Frame = 1 Query: 145 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 S GTTI+ V ++GGVVLGADSRT+TG Y+ANRV+DK+T + D ++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y VP+GG ++ Q FAI Y+YG+ D ++EGMTKEE Q A++LA+ RDG+SGGV+R I Sbjct: 32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAI 213
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50 Identity = 93/186 (50.00%), Postives = 130/186 (69.89%), Query Frame = 1 Query: 133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 N S GTTI+ V ++GGVVLGADSRT+TG Y+ANRV+DK+T + D+++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y VP+GG ++ Q FAI Y+YG+ D ++EGMTK+E Q A++LA+ RDG+SGGV+R I Sbjct: 27 NREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAI 212
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44 Identity = 84/182 (46.15%), Postives = 130/182 (71.43%), Query Frame = 1 Query: 145 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 S+GT+I+ VT+ GV+LGADSRT+TG Y+ANRV+DK+T++ D ++ CRSGSAAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D G++Y +PLGG++ + P+AI ++YG+ D+ ++E M+KEE + ++S AI DG+SGGV+R V + Sbjct: 17 SLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 197
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43 Identity = 85/180 (47.22%), Postives = 120/180 (66.67%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 GTTI+ V ++GGVV+G+DSR S G V NRV DK++ L +Y SGSAAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L ++V GWD++EGG++YG +GG +I QPFAI Y+YG+ D A+K GMT EE + A++LA+ RDG+SGGV+ VTI Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTI 198 The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bpback to top |