FC921256

Overview
NameFC921256
Unique NameFC921256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.523e-92
Identity = 166/195 (85.13%), Postives = 179/195 (91.79%), Query Frame = 1
Query:  109 MDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            MDL ++   APHSMGTTIIGVTYNGGVVLGADSRTSTG+YVANR SDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEGGKIYG+PLGGT++EQPFAI      YLYGFFDQAWK+ MTKEEAEQLVVKAVSLAIARDGASGGVVRTV IN
Sbjct:    1 MDLNLD---APHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIIN 192          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.252e-91
Identity = 165/189 (87.30%), Postives = 175/189 (92.59%), Query Frame = 1
Query:  127 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            D + PHSMGTTIIGVTYNGGVVLGADSRTSTG+YVANR SDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEGGKIYG+P GGT++EQPFAI      YLYGFFDQAWKEGMT+EEAE+LVV AVSLAIARDGASGGVVRTVTIN
Sbjct:    5 DVDQPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTIN 193          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 95/182 (52.20%), Postives = 136/182 (74.73%), Query Frame = 1
Query:  148 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            +GT+I+ V Y+GGV++GADSRT+TG Y+ANRV++KIT + + +Y CRSGSAAD+Q +SDYVRY+L  HT +L     VK AA+L +LL Y+NKN L  G+IV GWDK++GG +Y + LGG++++QPFAI      Y+YG+ D  +K  MTK+E  + V  +++LA+ RDG+SGGV+R   I+
Sbjct:   13 LGTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIID 194          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.685e-51
Identity = 95/186 (51.08%), Postives = 130/186 (69.89%), Query Frame = 1
Query:  133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            N   S GTTI+ V ++GGVVLGADSRT+TG Y+ANRV+DK+T + D ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ QPFAI      Y+YG+ D  ++EGMTKEE  Q    A++LA+ RDG+SGGV+R   I
Sbjct:   28 NREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAI 213          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.400e-50
Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 1
Query:  133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            N   S GTTI+ V +NGGVVLGADSRT+TG Y+ANRV+DK+T + D+++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTK+E  Q    A++LA+ RDG+SGGV+R   I
Sbjct:   27 NREVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAI 212          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.829e-50
Identity = 93/182 (51.10%), Postives = 129/182 (70.88%), Query Frame = 1
Query:  148 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            MGTTI  + Y  GV+L ADSRT+ G Y+ANRV+DK+TQLTDN++ CRSGSAAD+QTV+D ++Y+L  + IQ G   +V  AA L   + Y NKN L  G+IV G+D+  GG +Y +PLGG++ +QP AI      ++YGF D  ++E MT+EEA + +  AV+LA+ RDG+SGG +R V +N
Sbjct:   23 MGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILN 204          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 93/182 (51.10%), Postives = 128/182 (70.33%), Query Frame = 1
Query:  145 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            S GTTI+ V ++GGVVLGADSRT+TG Y+ANRV+DK+T + D ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTKEE  Q    A++LA+ RDG+SGGV+R   I
Sbjct:   32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAI 213          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 93/186 (50.00%), Postives = 130/186 (69.89%), Query Frame = 1
Query:  133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            N   S GTTI+ V ++GGVVLGADSRT+TG Y+ANRV+DK+T + D+++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTK+E  Q    A++LA+ RDG+SGGV+R   I
Sbjct:   27 NREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAI 212          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 84/182 (46.15%), Postives = 130/182 (71.43%), Query Frame = 1
Query:  145 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            S+GT+I+ VT+  GV+LGADSRT+TG Y+ANRV+DK+T++ D ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV G+D    G++Y +PLGG++ + P+AI      ++YG+ D+ ++E M+KEE    +  ++S AI  DG+SGGV+R V +
Sbjct:   17 SLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 197          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43
Identity = 85/180 (47.22%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            GTTI+ V ++GGVV+G+DSR S G  V NRV DK++ L   +Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   ++V GWD++EGG++YG  +GG +I QPFAI      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTI 198          
The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB6_ARATH2.523e-9285.13Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_TOBAC1.252e-9187.30Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_DICDI2.308e-5352.20Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_BOVIN3.685e-5151.08Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB6_MOUSE1.400e-5050.54Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_SCHPO1.829e-5051.10Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_HUMAN4.075e-5051.10Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB6_RAT5.321e-5050.00Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_YEAST5.699e-4446.15Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB9_RAT6.301e-4347.22Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC32102H10EF RVDevelopN Citrus clementina cDNA clone C32102H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bp
GATATCAAAATCTATCGTAAACAGGGGAGAATTAGAAGAAGCAAAACTTA
AAATTAAAATTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGTGTTTTA
GAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACACTCGATG
GGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCTCGGCGC
CGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGTTTCAGACA
AGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGATCGGCT
GCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCATCAACA
CACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCAATCTTG
TCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGAATGATT
GTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGTTCCTCT
TGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTGGCTCAA
GTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATGACCAAG
GAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCATTGCGCG
TGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTAATC
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