FC921259

Overview
NameFC921259
Unique NameFC921259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14278 contig Ccv1_Contig14278:1..370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921259 vs. ExPASy Swiss-Prot
Match: ARGE_DICDI (Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.226e-15
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 2
Query:   98 LNKDAYVNLPSKLIGESRYVQNNPPELIPQEDRVVKHVLDALLPLSTKTGGGPLVINHV----TYFTGRGNIIVEYPGTEPG----KILSFVGMHMDVV 370
            L++  ++ L  KLIGE+  +QN PP LIP ED   +HV++AL P   K  GG L +  V      +  RGNII+EYPGT  G    K +SFVG H+DVV
Sbjct:   10 LDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEALTPY-LKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVV 107          
The following BLAST results are available for this feature:
BLAST of FC921259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARGE_DICDI2.226e-1546.46Acetylornithine deacetylase OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionC32103A01EF RVDevelopN Citrus clementina cDNA clone C32103A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921259 ID=FC921259; Name=FC921259; organism=Citrus clementina; type=EST; length=370bp
GNGGAACCCCTCAAAACGCGACACGACATTCGCAAGGCTTCCTCGCTTCT
CGTGTTCGGCAATGGCTTCTTCAGTGGTGAAGGAAACTCTGGGCACTCTT
AACAAGGACGCCTATGTTAATCTTCCTTCAAAGCTAATTGGAGAGTCCAG
ATATGTGCAAAATAACCCACCTGAGTTGATCCCTCAGGAGGATAGGGTGG
TCAAGCATGTATTGGATGCTCTCCTTCCCTTGAGCACCAAAACTGGAGGA
GGACCTTTGGTTATTAATCATGTCACATACTTTACGGGCAGAGGAAATAT
TATTGTGGAGTATCCTGGAACTGAGCCTGGAAAGATCTTGTCATTTGTTG
GCATGCATATGGATGTTGTC
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