FC921265

Overview
NameFC921265
Unique NameFC921265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921265_ssr16 microsatellite FC921265_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6925 contig Ccv1_Contig6925:17..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: BXDC1_ARATH (Brix domain-containing protein 1 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.273e-38
Identity = 72/97 (74.23%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 VLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            +++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY+R+NENIRPFESGGETSLEFFS KTDCSIF+YGS ++
Sbjct:    1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTK 97          

HSP 2 Score: 28.1054 bits (61), Expect = 5.273e-38
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  630 KKRPDNLVIGRTY 668
            KKRPDNLV+GR Y
Sbjct:   97 KKRPDNLVLGRMY 109          
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: BXDC1_ORYSJ (Brix domain-containing protein 1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.585e-33
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = 1
Query:  343 VLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            V  ++ P++ R KR L K APKLVETGKKTLIL GTKTS  LN VL +L+ LK+ +A++Y++KN+NIRPFESGGETSLEFFSLKTDCS+ +YGS S+
Sbjct:    2 VAAIRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKKNDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSK 98          

HSP 2 Score: 28.4906 bits (62), Expect = 1.585e-33
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  630 KKRPDNLVIGRTY 668
            KKRP+NLV+GRTY
Sbjct:   98 KKRPNNLVLGRTY 110          
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: BXDC1_MOUSE (Brix domain-containing protein 1 OS=Mus musculus GN=Bxdc1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.439e-18
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  349 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +KN   RPFE   +TSLEFFS K+DCS+F++GS ++
Sbjct:    6 KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKKKNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNK 97          

HSP 2 Score: 26.9498 bits (58), Expect = 3.439e-18
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  630 KKRPDNLVIGRTY 668
            KKRP+NLVIGR Y
Sbjct:   97 KKRPNNLVIGRMY 109          
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: BXDC1_BOVIN (Brix domain-containing protein 1 OS=Bos taurus GN=BXDC1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.814e-18
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  349 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +KN   RPFE   +TSLEFFS K+DCS+F++GS ++
Sbjct:    6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKKKNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNK 97          

HSP 2 Score: 26.9498 bits (58), Expect = 5.814e-18
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  630 KKRPDNLVIGRTY 668
            KKRP+NLVIGR Y
Sbjct:   97 KKRPNNLVIGRMY 109          
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: BXDC1_HUMAN (Brix domain-containing protein 1 OS=Homo sapiens GN=BXDC1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.808e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  349 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            +V  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +KN   RPFE   +TSLEFFS K+DCS+F++GS ++
Sbjct:    6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNK 97          

HSP 2 Score: 26.9498 bits (58), Expect = 2.808e-17
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  630 KKRPDNLVIGRTY 668
            KKRP+NLVIGR Y
Sbjct:   97 KKRPNNLVIGRMY 109          
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: BXDC1_SCHPO (Brix domain-containing protein 1 homolog OS=Schizosaccharomyces pombe GN=SPAC926.08c PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  343 VLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            +L+   PKN R KRALEKR PKLVE  K  + L+G  TS    DVL +++ LKK  ++ + +KN NI PFE    +SLEFFS K D ++ +  + ++
Sbjct:    1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNFQKKN-NILPFEDA--SSLEFFSEKNDAALAVMATHNK 94          
BLAST of FC921265 vs. ExPASy Swiss-Prot
Match: RPF2_YEAST (Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae GN=RPF2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  343 VLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSPSR 633
            +++   PKN R KRAL KR  KLVE  K+ L + G   +  L+D++ +L  LKK    R+ RKN+ I PFE    + LEFFS K DCS+ +  + S+
Sbjct:    1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKND-IHPFED--MSPLEFFSEKNDCSLMVLMTSSK 94          
The following BLAST results are available for this feature:
BLAST of FC921265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BXDC1_ARATH5.273e-3874.23Brix domain-containing protein 1 homolog OS=Arabid... [more]
BXDC1_ORYSJ1.585e-3365.98Brix domain-containing protein 1 homolog OS=Oryza ... [more]
BXDC1_MOUSE3.439e-1847.37Brix domain-containing protein 1 OS=Mus musculus G... [more]
BXDC1_BOVIN5.814e-1847.37Brix domain-containing protein 1 OS=Bos taurus GN=... [more]
BXDC1_HUMAN2.808e-1746.32Brix domain-containing protein 1 OS=Homo sapiens G... [more]
BXDC1_SCHPO9.772e-1444.33Brix domain-containing protein 1 homolog OS=Schizo... [more]
RPF2_YEAST8.272e-1342.27Ribosome biogenesis protein RPF2 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC32103A07EF RVDevelopN Citrus clementina cDNA clone C32103A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921265 ID=FC921265; Name=FC921265; organism=Citrus clementina; type=EST; length=670bp
GAGACAGCAACAGCATCACTCACTCACCAAACCGTTCGCGCCTCACACCT
CCACCACTCACAAGCGGTTGAAATCGAAAACCACCCTAAATCCCTAACCC
TTGAACGCCGTCCAGCTTGCAGTCGCTCTCATCGAACGCCGAATGCCTCG
CCTGAGCTGAGCACGCGTTGTTGCCGTCGAAGGTTGAACGCCGGCTGCCC
TGCCTCGCCTCGCTCAGCGCACTTCACCGTCATCAAACGTCGGCAACCCG
CTGCATCTTGGCTCGCGTGAAACACACCGCACTTGGCCGCCTTGTCCATT
CTTTCCACTGTTGGTCGCTGTTAACACAAAAGGTTAAGAAATGTGTTGAA
AGTGAAAACTCCCAAGAATCCCAGAGTCAAGCGTGCGCTTGAAAAACGTG
CTCCAAAACTTGTTGAGACAGGGAAGAAGACGCTTATTCTTCAAGGAACA
AAGACGAGCAACACGTTGAATGATGTATTAACAGAACTTTATCTTCTGAA
GAAAGGAAGTGCAATAAGATATACCCGAAAGAATGAAAACATTAGACCTT
TTGAAAGTGGTGGTGAAACTTCTTTGGAGTTCTTTTCACTAAAAACGGAT
TGCAGCATTTTTATTTATGGTTCACCCTCAAGAAGCGGCCTGACAACCTG
GTTATAGGGCGAACATATGA
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