FC921310

Overview
NameFC921310
Unique NameFC921310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7917 contig Ccv1_Contig7917:386..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921310 vs. ExPASy Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.445e-98
Identity = 172/236 (72.88%), Postives = 198/236 (83.90%), Query Frame = 2
Query:    8 EIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAXSGGSSTPLTAVYGSTKCG 715
            ++GR ++TMMS+GVVL VGFQLSGGDSQMN LIWYSWLGG+IIGTM+GAN VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGD              T+ ELEEN++EG+  A    ++ L+HAKV G +CDVC+P DV+KL NFA +E GSIDIWINNAGTNKGF+PL+ F++E+I QIVSTNLVGS+LCTREAM VM+ Q KGGH+FNMDGA SGGSSTPLTAVYGSTKCG
Sbjct:  110 QVGRYVITMMSSGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCG 345          
BLAST of FC921310 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 6.713e-96
Identity = 176/236 (74.58%), Postives = 193/236 (81.78%), Query Frame = 2
Query:    8 EIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAXSGGSSTPLTAVYGSTKCG 715
            +I R IVTM STG +L +GFQLSGGDS MN+L+WYSWLGGIIIGTM GANMVLE+H +AGPRNVVITGSTRGLGKALAREFLLSGD             MTV ELE+NLKE M  A  S++K L  AKV GIACDVC+P DV+KLSNFAV E GSI+IWINNAGTNKGF+PLL+FT E+I QIVSTNL+GSILCTR AM VM  Q  GGHIFNMDGA SGGSSTPLTAVYGSTKCG
Sbjct:  101 QIARYIVTMTSTGAILLIGFQLSGGDSSMNSLVWYSWLGGIIIGTMTGANMVLEDHYRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTNLIGSILCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 336          
BLAST of FC921310 vs. ExPASy Swiss-Prot
Match: NOL_ORYSJ (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica GN=NOL PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.923e-34
Identity = 82/196 (41.84%), Postives = 113/196 (57.65%), Query Frame = 2
Query:  125 GIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAXSGGSSTPLTAVYGSTK 709
            GI    + G   V        P NV+ITGST+G+G ALA+EFL +GD               VT+L               KK      V GI CDV E  DV+ L +FA ++   IDIWINNAG+N   +KPL++ ++E + ++++TN +G ++C REA+ +MR+QP+GGHIFN+DGA S G  TP  A YG+TK
Sbjct:   52 GIRAEAVPGGGGVARRAAMVPPYNVLITGSTKGIGYALAKEFLKAGDNVVICSRSAERVESAVTDL---------------KKEFGEQHVWGIVCDVREGKDVKALVDFARDKMKYIDIWINNAGSNAYSYKPLVETSDEALMEVITTNTLGLMICCREAINMMRNQPRGGHIFNIDGAGSDGRPTPRFAAYGATK 232          
BLAST of FC921310 vs. ExPASy Swiss-Prot
Match: NOL_ARATH (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 76/175 (43.43%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  188 PRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAXSGGSSTPLTAVYGSTK 709
            P N++ITGST+G+G ALAREFL +GD               V  L+E   E                 V G  CDV E  DV++L  ++      IDIWINNAG+N   FKPL + ++E++ ++V TN +G +LC REAM +M  Q +GGHIFN+DGA S G  TP  A YG+TK
Sbjct:   79 PYNILITGSTKGIGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGE----------------HVWGTKCDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDEDLIEVVKTNTLGLMLCCREAMNMMLTQSRGGHIFNIDGAGSDGRPTPRFAAYGATK 237          
BLAST of FC921310 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  149 GANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN--KGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI------FNMDGAXSGGSSTPLTAVYGSTK 709
            G++ V  +  K   +  VITG   G+G   AR F+  G              + V ++++ L   ++A  G    + VH       CDV    DV    + AV  FG +D+  NNAG +    F+ + + T E+ E++++ NLVG  L T+ A RVM    +G  I       ++ GA S   +T   A+ G T+
Sbjct:    4 GSSHVSADARKLVGKVAVITGGASGIGACTARLFVKHG------------ARVVVADIQDELGASLVAELGPDASSYVH-------CDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFR-MSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIISTASLSSSVSGAASHAYTTSKHALVGFTE 178          
The following BLAST results are available for this feature:
BLAST of FC921310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NYC1_ORYSJ1.445e-9872.88Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
NYC1_ARATH6.713e-9674.58Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
NOL_ORYSJ1.923e-3441.84Chlorophyll(ide) b reductase NOL, chloroplastic OS... [more]
NOL_ARATH3.394e-3143.43Chlorophyll(ide) b reductase NOL, chloroplastic OS... [more]
MOMAS_ORYSJ2.987e-1128.72Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank descriptionC32103E04EF RVDevelopN Citrus clementina cDNA clone C32103E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921310 ID=FC921310; Name=FC921310; organism=Citrus clementina; type=EST; length=715bp
TCGCCGGGAAATTGGGAGATGTATAGTGACAATGATGAGCACTGGAGTTG
TACTTGCCGTTGGTTTTCAGTTGTCAGGTGGAGACAGCCAGATGAATGCA
CTGATATGGTATAGCTGGCTTGGAGGAATTATTATTGGAACTATGGTAGG
AGCTAATATGGTTCTAGAAGAACACTGTAAAGCTGGTCCAAGAAATGTTG
TCATTACTGGAAGTACGAGGGGACTAGGAAAAGCACTTGCTCGAGAATTT
CTTCTTTCTGGAGATAGAGTGGTCGTTGCTTCTCGCAGCTCTGAGTCTGT
ACGTATGACTGTCACAGAGCTTGAGGAGAACCTCAAGGAAGGTATGATGG
CTGCAGGTGGCTCATCCAAGAAAAATCTGGTGCATGCTAAAGTGGCTGGC
ATAGCATGTGATGTTTGTGAACCAGCTGATGTGCAGAAATTGTCAAACTT
TGCTGTCAATGAATTTGGTTCTATCGACATATGGATAAATAATGCGGGTA
CAAACAAAGGTTTTAAACCCTTGCTGCAGTTTACAAATGAAGAAATTGAA
CAGATTGTCTCAACAAATCTAGTTGGATCTATTCTCTGCACTCGTGAGGC
TATGCGTGTGATGAGAGACCAGCCAAAGGGAGGCCACATATTTAACATGG
ACGGTGCANGCTCTGGAGGGTCTAGTACCCCTCTCACTGCTGTCTATGGG
TCCACAAAATGTGGT
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