FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 5.196e-61 Identity = 114/182 (62.64%), Postives = 128/182 (70.33%), Query Frame = 2 Query: 59 LTMAAQSYTTIPLYSKITNXXXXXXXXXXXXXXXTAK---HLRTTQSTSLPRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 + MA Y + + SK TN T L T QS +L + +AA+ +++E L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQ Sbjct: 1 MAMATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKI--LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQ 180 HSP 2 Score: 40.0466 bits (92), Expect = 5.196e-61 Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1 Query: 595 RPKLSPYKETIRTNLSELLGADPXRCN 675 RPK+SP+KE IR NL +LLGADP N Sbjct: 181 RPKVSPHKEAIRQNLCQLLGADPCVVN 207
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 8.836e-61 Identity = 109/143 (76.22%), Postives = 116/143 (81.12%), Query Frame = 2 Query: 176 RTTQSTSL---PRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R +S SL P SVSAA+++ V LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQ Sbjct: 36 RPKKSLSLSCRPSASVSAASSA---VDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQ 175 HSP 2 Score: 44.669 bits (104), Expect = 8.836e-61 Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 Query: 595 RPKLSPYKETIRTNLSELLGADPXRCN 675 RPK+SP+KETIR+NLS+LLGADP N Sbjct: 176 RPKISPHKETIRSNLSKLLGADPSVVN 202
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 9.254e-31 Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G+D+H L PG LI+GG+++PH+RG HSD D LLH V DA+ GA L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q Sbjct: 7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQ 106 HSP 2 Score: 27.335 bits (59), Expect = 9.254e-31 Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + +PKL+P+ + NL+E LG RCN Sbjct: 105 AQKPKLAPHISGMVANLAEDLGLPVTRCN 133
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.159e-30 Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2 Query: 287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 LP RVG GFD+H+LE G L +GGI + H++G HSD DV LH +VDA+LGA+G DIG FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + Sbjct: 224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICE 326
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 9.962e-30 Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 2 Query: 287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 + R+G G+D+H L G LI+GG+ +PH RG HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q Sbjct: 4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQ 106 HSP 2 Score: 28.1054 bits (61), Expect = 9.962e-30 Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + +PKL+P+ + NL+ LG P RCN Sbjct: 105 AQKPKLAPHVPGMVANLAADLGIAPGRCN 133
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 9.962e-30 Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2 Query: 287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 + R+G G+D+H L G LI+GG+ +PH RG HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I Q Sbjct: 4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQ 106 HSP 2 Score: 30.4166 bits (67), Expect = 9.962e-30 Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + +PKL+P+ + NL+E LG P RCN Sbjct: 105 AQKPKLAPHVPGMVANLAEDLGIAPERCN 133
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.300e-29 Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 2 Query: 293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 FR+G GFD+H E G PLIIGGI +PHE+G HSD DVLLH V DA LGA+G DIG+ FPD+DP +K A S+ ++ +++++ GY +GN+D T++ Q Sbjct: 2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQ 102 HSP 2 Score: 32.7278 bits (73), Expect = 1.300e-29 Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 1 Query: 577 CHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675 C + RPK++PY E ++ ++ELL A+P + N Sbjct: 97 CTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVN 129
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.864e-29 Identity = 58/105 (55.24%), Postives = 78/105 (74.29%), Query Frame = 2 Query: 287 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 +PF RVG G+D+H L PG LI+GG+++PH+RG HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I Q Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQ 106 HSP 2 Score: 25.0238 bits (53), Expect = 2.864e-29 Identity = 10/29 (34.48%), Postives = 18/29 (62.07%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + +PKL+P+ + N+++ LG RCN Sbjct: 105 AQQPKLAPHIPGMVANIADDLGLPATRCN 133
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ispF PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.864e-29 Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 2 Query: 287 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 +PF RVG G+D+H L PG LI+GG+ +PH+RG HSD D LLH V DA+ GA L DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DAT+I Q Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDATVIAQ 106 HSP 2 Score: 25.7942 bits (55), Expect = 2.864e-29 Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLGADPXRCN 675 PKL+P+ + NL+E LG RCN Sbjct: 108 PKLAPHIGAMVANLAEDLGIARGRCN 133
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sulfurreducens GN=ispF PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.872e-29 Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+HRL G LI+GG+++PHE G HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S ++ + L G+ +GNLDAT++ Q Sbjct: 2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHFPDTDPRYKGADSRALLRHVMELATRKGFHLGNLDATIVAQ 101 HSP 2 Score: 26.1794 bits (56), Expect = 2.872e-29 Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + RPK++P+ +R +++ L ADP R N Sbjct: 100 AQRPKMAPHIPLMREHIAADLMADPDRVN 128 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |