FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:21..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 5.196e-61
Identity = 114/182 (62.64%), Postives = 128/182 (70.33%), Query Frame = 2
Query:   59 LTMAAQSYTTIPLYSKITNXXXXXXXXXXXXXXXTAK---HLRTTQSTSLPRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            + MA   Y +  + SK TN               T      L T QS +L  +  +AA+ +++E               L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQ
Sbjct:    1 MAMATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKI--LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQ 180          

HSP 2 Score: 40.0466 bits (92), Expect = 5.196e-61
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  595 RPKLSPYKETIRTNLSELLGADPXRCN 675
            RPK+SP+KE IR NL +LLGADP   N
Sbjct:  181 RPKVSPHKEAIRQNLCQLLGADPCVVN 207          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.836e-61
Identity = 109/143 (76.22%), Postives = 116/143 (81.12%), Query Frame = 2
Query:  176 RTTQSTSL---PRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R  +S SL   P  SVSAA+++   V              LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQ
Sbjct:   36 RPKKSLSLSCRPSASVSAASSA---VDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQ 175          

HSP 2 Score: 44.669 bits (104), Expect = 8.836e-61
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1
Query:  595 RPKLSPYKETIRTNLSELLGADPXRCN 675
            RPK+SP+KETIR+NLS+LLGADP   N
Sbjct:  176 RPKISPHKETIRSNLSKLLGADPSVVN 202          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.254e-31
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQ 106          

HSP 2 Score: 27.335 bits (59), Expect = 9.254e-31
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + +PKL+P+   +  NL+E LG    RCN
Sbjct:  105 AQKPKLAPHISGMVANLAEDLGLPVTRCN 133          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.159e-30
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I +
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICE 326          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.962e-30
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQ 106          

HSP 2 Score: 28.1054 bits (61), Expect = 9.962e-30
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + +PKL+P+   +  NL+  LG  P RCN
Sbjct:  105 AQKPKLAPHVPGMVANLAADLGIAPGRCN 133          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.962e-30
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I Q
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQ 106          

HSP 2 Score: 30.4166 bits (67), Expect = 9.962e-30
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + +PKL+P+   +  NL+E LG  P RCN
Sbjct:  105 AQKPKLAPHVPGMVANLAEDLGIAPERCN 133          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.300e-29
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ Q
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQ 102          

HSP 2 Score: 32.7278 bits (73), Expect = 1.300e-29
Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 1
Query:  577 CHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675
            C   + RPK++PY E ++  ++ELL A+P + N
Sbjct:   97 CTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVN 129          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.864e-29
Identity = 58/105 (55.24%), Postives = 78/105 (74.29%), Query Frame = 2
Query:  287 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +PF  RVG G+D+H L PG  LI+GG+++PH+RG   HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I Q
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQ 106          

HSP 2 Score: 25.0238 bits (53), Expect = 2.864e-29
Identity = 10/29 (34.48%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + +PKL+P+   +  N+++ LG    RCN
Sbjct:  105 AQQPKLAPHIPGMVANIADDLGLPATRCN 133          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_RALEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ispF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.864e-29
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  287 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DAT+I Q
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDATVIAQ 106          

HSP 2 Score: 25.7942 bits (55), Expect = 2.864e-29
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGADPXRCN 675
            PKL+P+   +  NL+E LG    RCN
Sbjct:  108 PKLAPHIGAMVANLAEDLGIARGRCN 133          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sulfurreducens GN=ispF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.872e-29
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+HRL  G  LI+GG+++PHE G   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L    G+ +GNLDAT++ Q
Sbjct:    2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHFPDTDPRYKGADSRALLRHVMELATRKGFHLGNLDATIVAQ 101          

HSP 2 Score: 26.1794 bits (56), Expect = 2.872e-29
Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + RPK++P+   +R +++  L ADP R N
Sbjct:  100 AQRPKMAPHIPLMREHIAADLMADPDRVN 128          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CATRO5.196e-6162.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ARATH8.836e-6176.222-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALME9.254e-3158.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH1.159e-3058.25Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_RALSO9.962e-3053.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALPJ9.962e-3052.432-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC1.300e-2952.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEJ2.864e-2955.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEH2.864e-2956.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSL2.872e-2954.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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