FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig214 contig Ccv1_Contig214:8..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_TOBAC (Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.319e-87
Identity = 160/218 (73.39%), Postives = 184/218 (84.40%), Query Frame = 3
Query:   36 MSC----SSISAISNFPLYXXXXXXXXXRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            MSC    SSIS  S              R + C+ GGTVAEPK ++  +P+LL AVRG++VERPPVWLMRQAGRYMKSYQ++CEKYP FR+RSENVDLVVEISLQPW VF+PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDP+ T A+V++VREF PE+SVPYVG+ALTILR+EVNN+AAVLGFVGAPFTL SYVVEGGSSK+F +IKRLAF++P
Sbjct:    2 MSCNYSFSSISPSSKSAFTSPSNFNLNPRLICCSAGGTVAEPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEP 219          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP2_ARATH (Uroporphyrinogen decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=At2g40490 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.004e-82
Identity = 151/191 (79.06%), Postives = 168/191 (87.96%), Query Frame = 3
Query:  108 RYVRCAVGGTVAEPKNVSV-AEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            R VRC+V GT    + VS  +EP+LL+AV+GE V+RPPVWLMRQAGRYMKSYQ +CEKYPSFR+RSEN DLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDI+KGKGP+IF+P  + A+V QVREF PEESVPYVG+AL  LR EVNNEAAVLGFVGAPFTL SYV+EGGSSK+F QIKRLAFSQP
Sbjct:   32 RIVRCSVEGTTVTERKVSATSEPLLLRAVKGEVVDRPPVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESVPYVGEALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFTQIKRLAFSQP 222          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP2_ORYSJ (Uroporphyrinogen decarboxylase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0337600 PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.117e-80
Identity = 148/190 (77.89%), Postives = 167/190 (87.89%), Query Frame = 3
Query:  114 VRC-AVGGTVAEPKNVSVAE-PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            VRC AVG  +AE   V  AE P+L+ A++G  VERPPVWLMRQAGRYMKSYQ++CE++PSFRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIPFDI+KGKGPVIFDP+ T A V++VREF PEE VPYVG+AL ILREEVNNEAAVLGFVGAPFTL SY VEGGSSK+F +IK++AFS+P
Sbjct:   29 VRCSAVGEVMAETAAVGTAEEPLLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEP 218          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_MAIZE (Uroporphyrinogen decarboxylase, chloroplastic OS=Zea mays GN=LES22 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.906e-73
Identity = 132/160 (82.50%), Postives = 147/160 (91.88%), Query Frame = 3
Query:  198 EDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            E+VERPPVWLMRQAGRYMKSYQ++CE+YPSFRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL ILR+EV NEAAVLGFVGAPFTL SY VEGGSSK+F  IK++AFS+P
Sbjct:   62 EEVERPPVWLMRQAGRYMKSYQLLCERYPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNILRQEVKNEAAVLGFVGAPFTLASYCVEGGSSKNFTLIKKMAFSEP 221          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_HORVU (Uroporphyrinogen decarboxylase (Fragment) OS=Hordeum vulgare GN=DCUP PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.330e-71
Identity = 130/158 (82.28%), Postives = 143/158 (90.51%), Query Frame = 3
Query:  204 VERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            VERPPVWLMRQAGRYMKSYQ +CEKYP FRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL +LR EV NEAAVLGFVGAPFTL SY VEGGSSK+F +IKR+AF++P
Sbjct:    1 VERPPVWLMRQAGRYMKSYQNLCEKYPLFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNLLRGEVKNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKRMAFAEP 158          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNP2 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemE PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.674e-61
Identity = 111/169 (65.68%), Postives = 136/169 (80.47%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VER PVW+MRQAGRYMK Y+ + EKYPSFRERSEN DL +EISLQPWH F+PDGVI+FSDILTPL GM IPFDII+ KGP+I +PI T A+VD +  FDP ES+P++   L  LR+EV N + VLGFVGAP+TL +Y +EG SSK++  IK +AFS+P
Sbjct:    8 PLLLRAARGEKVERTPVWMMRQAGRYMKIYRDLREKYPSFRERSENPDLAIEISLQPWHAFQPDGVIMFSDILTPLPGMGIPFDIIESKGPIIENPIRTQAQVDAMTPFDPAESLPFIKTILGTLRQEVGNASTVLGFVGAPWTLAAYAIEGKSSKNYAIIKNMAFSEP 176          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNSC (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain CC9605) GN=hemE PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.156e-60
Identity = 113/169 (66.86%), Postives = 136/169 (80.47%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP+H FKPDGVILFSDILTPL GM I FDII+ KGP I DPI + A+VD +R  +P ES+P+VG+ L  LR+ V NEAAVLGFVGAP+TL +YVVEG SSK++  IK + F +P
Sbjct:    6 PLLLRAARGESVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFHAFKPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRSMAQVDALRPLNPSESMPFVGEVLGRLRQSVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMVFREP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CYAA5 (Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain ATCC 51142) GN=hemE PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.384e-60
Identity = 108/169 (63.91%), Postives = 135/169 (79.88%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW  F+PDGVI+FSDILTPL GM IPFDI++ KGPVI  PI T  +VD +R  DPEES+P++   L  LR+EV N++ VLGFVG+P+TL +Y +EG SSK++  IK +AFSQP
Sbjct:    8 PYLLRAARGEILDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLAIEISLQPWRAFQPDGVIMFSDILTPLPGMGIPFDIVESKGPVIDPPIRTKEQVDNLRPLDPEESLPFIKTILQSLRQEVGNQSTVLGFVGSPWTLAAYAIEGKSSKNYAIIKSMAFSQP 176          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_TRIEI (Uroporphyrinogen decarboxylase OS=Trichodesmium erythraeum (strain IMS101) GN=hemE PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.184e-60
Identity = 107/169 (63.31%), Postives = 136/169 (80.47%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+A RGE ++RPPVW+MRQAGRYMK+Y+ + EKYPSFRERSEN D+ VEISLQP+H FKPDGVILFSDILTPL  + I FDII+ KGP+I  PI T+A++D++   +PEES+P++ + L  LR EV NEAAVLGF+GAP+TL +Y +EG S K +  IK++AF QP
Sbjct:    8 PYLLRATRGELLDRPPVWMMRQAGRYMKAYRDLREKYPSFRERSENTDIAVEISLQPFHAFKPDGVILFSDILTPLPAIGIDFDIIESKGPIIDPPIRTEAQIDKLHPIEPEESLPFIREILQTLRREVKNEAAVLGFIGAPWTLAAYAIEGKSCKDYTNIKKMAFCQP 176          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNPX (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain WH8102) GN=hemE PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.566e-59
Identity = 113/169 (66.86%), Postives = 136/169 (80.47%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP+H FKPDGVILFSDILTPL GM I FDII+ KGP I DPI +  +V+ +R  +P ES+P+VG+ L  LRE V NEAAVLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLRAARGEAVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFHAFKPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRSMDQVNALRPLNPSESMPFVGEVLGRLRESVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFREP 174          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_TOBAC2.319e-8773.39Uroporphyrinogen decarboxylase, chloroplastic OS=N... [more]
DCUP2_ARATH5.004e-8279.06Uroporphyrinogen decarboxylase 2, chloroplastic OS... [more]
DCUP2_ORYSJ6.117e-8077.89Uroporphyrinogen decarboxylase 2, chloroplastic OS... [more]
DCUP_MAIZE1.906e-7382.50Uroporphyrinogen decarboxylase, chloroplastic OS=Z... [more]
DCUP_HORVU2.330e-7182.28Uroporphyrinogen decarboxylase (Fragment) OS=Horde... [more]
DCUP_SYNP21.674e-6165.68Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_SYNSC3.156e-6066.86Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_CYAA55.384e-6063.91Uroporphyrinogen decarboxylase OS=Cyanothece sp. (... [more]
DCUP_TRIEI9.184e-6063.31Uroporphyrinogen decarboxylase OS=Trichodesmium er... [more]
DCUP_SYNPX1.566e-5966.86Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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