FC921315

Overview
NameFC921315
Unique NameFC921315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921315_ssr13 microsatellite FC921315_ssr13:13..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12363 contig Ccv1_Contig12363:108..427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921315 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.689e-23
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   96 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLHLDITPY 320
            MAQILAPS+QWQMR  K S   S MT+KMW SL +KQNKK   RSS K+R LA+KSED T+NR+EDLL+LD+TPY
Sbjct:    1 MAQILAPSVQWQMRFTKNSTEVSSMTSKMWGSLFLKQNKKAPARSSTKYRALAVKSEDGTINRMEDLLNLDVTPY 75          
BLAST of FC921315 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.094e-22
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   96 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLHLDITPY 320
            MAQILAPS QWQMR  K S  ASP+T+  WSSLLMKQNKK    SSAKFRVLA+KS+ ST+NRLE LL+LDITP+
Sbjct:    1 MAQILAPSTQWQMRFTKSSRHASPITSNTWSSLLMKQNKK---TSSAKFRVLAVKSDGSTINRLEGLLNLDITPF 72          
BLAST of FC921315 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.521e-21
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:   96 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLHLDITPY 320
            MAQILAPS QWQMR+ K S  A+P+T+KMWSSL+MKQ KK  +  SAKFRV+A+ SE+ T+NR+EDLL+LDITP+
Sbjct:    1 MAQILAPSTQWQMRITKTSPCATPITSKMWSSLVMKQTKKVAH--SAKFRVMAVNSENGTINRVEDLLNLDITPF 73          
BLAST of FC921315 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.385e-17
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   96 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLHLDITPY 320
            MAQILAPS+Q Q R+ K S +A+P+++KMWSSL+MKQNKK     SAKFRV+A+ S   T+NR+EDLL+LDITP+
Sbjct:    1 MAQILAPSIQCQTRITKTSPLATPISSKMWSSLVMKQNKKVAR--SAKFRVMAINS--GTINRVEDLLNLDITPF 71          
BLAST of FC921315 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.111e-14
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 3
Query:   96 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLHLDITPY 320
            MAQILA S   QMR+PK+S++ +  ++K+WSS+++KQ K+  N+    FRVLAL+S++STVNR+E LL+LD  PY
Sbjct:    1 MAQILAASPTCQMRVPKHSSVIAS-SSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNSTVNRVETLLNLDTKPY 73          
BLAST of FC921315 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 36/75 (48.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:   96 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLHLDITPY 320
            MAQILA S   QMR+ K S+IAS   +K+W+S+++KQ K+ +++  + F+V+AL+S++ST+NR+E LL+LD  P+
Sbjct:    1 MAQILAASPTCQMRLTKPSSIAS---SKLWNSVVLKQKKQSSSKVRS-FKVMALQSDNSTINRVESLLNLDTKPF 71          
The following BLAST results are available for this feature:
BLAST of FC921315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GLNA2_DAUCA1.689e-2368.00Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA4_PHAVU7.094e-2272.00Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA3.521e-2166.67Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_MEDSA1.385e-1762.67Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH7.111e-1453.33Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNAC_BRANA1.483e-1148.00Glutamine synthetase, chloroplastic OS=Brassica na... [more]
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Properties
Property NameValue
Genbank descriptionC32103E09EF RVDevelopN Citrus clementina cDNA clone C32103E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921315 ID=FC921315; Name=FC921315; organism=Citrus clementina; type=EST; length=320bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTNC
ATTTGGACATCACTCCATAT
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