FC921316

Overview
NameFC921316
Unique NameFC921316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5314 contig Ccv1_Contig5314:110..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 6.612e-95
Identity = 180/221 (81.45%), Postives = 194/221 (87.78%), Query Frame = 1
Query:   10 ILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGILTAPAPSADV-NITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGVPDLTKLXNAEVVS 669
            IL D P+YS FNSYL+QTKLADEINSR TITVLVL NGAMS L  KHPLSVIKSALSLLVLLDYYDPQKLH+ISKG           GNAPGNLGFVNITDL+GGKVGFGSAASGSKLDS+YTKSVKQIPYN+S+LEI +PIIAPG+LTAPAPSA + NIT LLEKAGCKTFA+LLVSSGV+KT+ESA+ KGLTVFAPSDEAFKA GVPDLTKL  AEVVS
Sbjct:   31 ILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPGVLTAPAPSASLSNITGLLEKAGCKTFANLLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQAEVVS 251          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.290e-90
Identity = 174/222 (78.38%), Postives = 189/222 (85.14%), Query Frame = 1
Query:   10 ILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGILTAPAPSAD--VNITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGVPDLTKLXNAEVVS 669
            IL D PEYS FN+YL+QTKLADEINSR TITVLVL NGAMS L  KHPLSV+K+ALSLLVLLDYYDP KLHQ+SKG           G+A GNLGFVN+TDL+GGKVGFGSAA GSKLDS+YTKSVKQIPYN+SVLEI++PIIAPGILTAPAPS+    NIT LLEKAGCKTFA+LLVSSGVIKTFES + KGLTVFAPSDEAFKA GVPDLT L  AEVVS
Sbjct:   31 ILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKHPLSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPGILTAPAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTVEKGLTVFAPSDEAFKARGVPDLTNLTQAEVVS 252          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.196e-45
Identity = 97/206 (47.09%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   10 ILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAK-HPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGILTAPAPS-ADVNITALLEKAGCKTFA-SLLVSSGVIKTFESAISKGLTVFAPSDEAFK 618
            +L + P +S F+ +LTQT LADEIN R+TITV  + N AMS LT+K + LS +K+ LSL VLLDY+  +KLHQI  G           G APG  GFVNITDL+GGKVGFG    G  L S + KS++++PYN+S+++IS  ++      AP P+ A++N+T ++   GCK FA +LL + G  KT++ ++  G+TVF P D+A K
Sbjct:   30 LLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVGFG--PDGGDLSSFFVKSIEEVPYNISIIQISR-VLPSETAAAPTPAPAEMNLTGIMSAHGCKVFAETLLTNPGASKTYQESLEGGMTVFCPGDDAMK 232          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.826e-44
Identity = 96/202 (47.52%), Postives = 128/202 (63.37%), Query Frame = 1
Query:   10 ILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAK-HPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGILTAPAPSADVNITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEA 612
            IL   P++S FN YL+ T LADEIN RQTITVL + N AMS + +  + L  I++ LSL VL+DY+  +KLHQI+ G           G+A G  G++NITD++GGKV FG     SKL + Y KSV + PYN+SVL IS  + +P      A  +D+ +T +LEK GCK F+ +L S+G  KTF+  +  GLTVF PSD A
Sbjct:   32 ILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINITDIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVLHISQVLTSPEAEAPTASPSDLILTTILEKQGCKAFSDILKSTGADKTFQDTVDGGLTVFCPSDSA 233          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA14_ARATH (Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana GN=FLA14 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    7 DILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPII 438
            +IL +  ++S FN  L++T+LA  IN RQTITVLV+ NGA+S L+ + P SVIK  LSL ++LDYYD +KL  +SK            G A G  GF+N T ++ G V FGSA  GS LD+    +V  +P+N+SVL ISS I+
Sbjct:   28 NILNEHDDFSNFNQLLSETQLASTINKRQTITVLVVSNGALSSLSGQ-PTSVIKKILSLHIVLDYYDQKKLKNLSKKTVLLTTLFQSSGLARGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNISVLHISSAIM 170          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA3_ARATH (Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana GN=FLA3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 66/212 (31.13%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   10 ILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGI---LTAPAPSADVNITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGVPD 636
            +L+ +PE+S     L +T+L   IN RQTITVL L N A+  ++ + P   +K+ L   V+LDY+D  KL  + +            G      GF+N T    GK+ FGS   G+   + Y  +V + PYN+SV++IS PI+APG+   +  P P    +  A   K G  T A      G        ++      +   E+   A  PD
Sbjct:   30 VLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGR-PEEEVKNILMNHVVLDYFDELKLKALKEKSTLLTTLYQSTGLGQQQNGFLNCTK-SNGKIYFGSGVKGAPQTAEYITTVFRNPYNLSVVQISMPIVAPGLGSPVKVPPPPPMSSPPAPSPKKGAATPAPAPADEGDYADAPPGLAPETAPASAPSESDSPAPAPD 239          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA4_ARATH (Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 72/223 (32.29%), Postives = 103/223 (46.19%), Query Frame = 1
Query:   10 ILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMS----DLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNIT-DLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGI-------LTAP-------APSADVNITALLEKA-GCKTFASLLVSSGVIKTFES-AISKGLTVFAPSDEAF 615
            +L  FP  S F++ L  + +A E++ R ++T+L +PN   S    DLT + P S +   L   VLL +     L +I              G      G VN+T D   G V  GS A+    + T  K ++  P N++VL + S I+  GI       LT P        P A +N+T +L          SLLV+SGVI  FE+     G+TVF P+D AF
Sbjct:   34 VLSSFPNLSSFSNLLVSSGIAAELSGRNSLTLLAVPNSQFSSASLDLTRRLPPSALADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEASGRTFFGSGSVNVTRDPASGSVTIGSPAT---KNVTVLKLLETKPPNITVLTVDSLIVPTGIDITASETLTPPPTSTSLSPPPAGINLTQILINGHNFNVALSLLVASGVITEFENDERGAGITVFVPTDSAF 253          
BLAST of FC921316 vs. ExPASy Swiss-Prot
Match: FLA5_ARATH (Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana GN=FLA5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 54/160 (33.75%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   22 FPEYSQFNSY---LTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQISKGXXXXXXXXXXXGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLEISSPIIAPGILTA--PAPSADVNI 486
            F +YS+F++      +TKL   I+  QTITVL + N A+S +T +  +  +++ L   V+LDYYD  KL  + +            G      GF+N++  +G +V FGS    S L++ Y  +V   PYN+S+++I+ PI+APG+  A  P P   V++
Sbjct:   31 FQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVE-LRNILMTHVILDYYDELKLQGMREKSIMLTTLYQTTGLGEQMNGFLNVSKSKG-RVYFGSEVKNSPLNAEYVSTVYHNPYNLSIIQITMPIVAPGLSLAIFPPPPPYVHV 188          
The following BLAST results are available for this feature:
BLAST of FC921316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FLA8_ARATH6.612e-9581.45Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA10_ARATH1.290e-9078.38Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA1_ARATH8.196e-4547.09Fasciclin-like arabinogalactan protein 1 OS=Arabid... [more]
FLA2_ARATH1.826e-4447.52Fasciclin-like arabinogalactan protein 2 OS=Arabid... [more]
FLA14_ARATH5.337e-2847.22Fasciclin-like arabinogalactan protein 14 OS=Arabi... [more]
FLA3_ARATH4.529e-1931.13Fasciclin-like arabinogalactan protein 3 OS=Arabid... [more]
FLA4_ARATH7.230e-1732.29Fasciclin-like arabinogalactan protein 4 OS=Arabid... [more]
FLA5_ARATH7.994e-1633.75Fasciclin-like arabinogalactan protein 5 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32103E10EF RVDevelopN Citrus clementina cDNA clone C32103E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921316 ID=FC921316; Name=FC921316; organism=Citrus clementina; type=EST; length=670bp
AATCCCGACATTCTCAAAGACTTTCCAGAATACTCCCAGTTTAACAGCTA
TCTTACCCAAACAAAACTAGCCGATGAAATCAACAGTCGCCAAACAATCA
CCGTCCTTGTCCTCCCCAACGGAGCTATGTCTGATCTCACAGCCAAACAC
CCCCTCTCCGTTATCAAAAGCGCACTTAGCCTCCTCGTTTTGCTTGACTA
CTACGACCCACAAAAGCTCCATCAAATTTCCAAAGGCACCACTCTCAGTA
CCACTCTTTACCAAACCACCGGAAATGCCCCTGGCAACTTAGGTTTCGTG
AATATTACCGATCTCCAAGGTGGCAAAGTCGGCTTCGGCTCGGCTGCTTC
TGGCTCTAAGCTCGACTCCACTTACACCAAATCCGTTAAGCAGATTCCTT
ACAATGTCTCTGTCCTTGAGATCAGTAGTCCGATTATTGCGCCCGGAATC
TTAACGGCTCCCGCTCCATCGGCCGACGTTAACATTACGGCGTTGCTTGA
GAAAGCTGGGTGCAAGACCTTTGCCAGCTTGCTTGTCTCCAGTGGTGTGA
TTAAAACTTTTGAGTCTGCGATTTCTAAAGGATTGACTGTTTTTGCGCCG
TCCGATGAGGCTTTTAAGGCAGCTGGCGTTCCTGATCTGACCAAGCTCNA
CAATGCCGAGGTGGTCTCCC
back to top