FC921324

Overview
NameFC921324
Unique NameFC921324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14502 contig Ccv1_Contig14502:60..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921324 vs. ExPASy Swiss-Prot
Match: SNAG_ARATH (Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.720e-78
Identity = 144/215 (66.98%), Postives = 170/215 (79.07%), Query Frame = 1
Query:   82 SSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEGDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATKQPVQAYLSAIIVYLYANDFQQ-QRMLHDC 723
            SSDP K+M KADK+TKL+LTRWSADW+ AT+LYEQAANGFR +   E+AK+A EKAS+GQEM +SPWDAAKHMESAAALA++L  W EVADFYRKASELY ECGR+QP                P+DAIQLYTDAC +LE D ++QMAFDLYRA  NVYIKLEK+ DAATF LR G+AADKC+AT    +AYLSAII+YLYA+D QQ ++  +DC
Sbjct:    2 SSDPDKMMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQEMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARALEDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGVAADKCDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDC 216          
BLAST of FC921324 vs. ExPASy Swiss-Prot
Match: SNAG_DICDI (Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpC PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  103 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEGDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATKQPVQAYLSAIIVYLYANDFQQQRMLHD 720
            M + DKL+K ++ RW ADW SA   YE+AAN FR AK  + AK  F + S  Q  +   + AAK ME+A+A+AKEL   +E A+   ++ +LY   G S                      I+L TDAC + E DDK+  + D ++   ++ +K +KY +A   ++       K        ++ LS I + L  +D    +  ++
Sbjct:   17 MKEGDKLSKTNIFRWKADWDSAALAYEKAANAFRSAKIYDSAKYCFLRLSLCQTHMDVYYLAAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAKLLEDIDLNQTIKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMILQNRVFVKLEQNHDLHKSCLSVITISLATDDIVASKKYYE 222          
BLAST of FC921324 vs. ExPASy Swiss-Prot
Match: SNAG_BOVIN (Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 53/209 (25.36%), Postives = 93/209 (44.50%), Query Frame = 1
Query:   70 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEGDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATKQPVQAYLSAIIVYLYANDF 696
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  K +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +        +  ++ ++V+L+ ND+
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY 210          
BLAST of FC921324 vs. ExPASy Swiss-Prot
Match: SNAG_MOUSE (Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 52/209 (24.88%), Postives = 93/209 (44.50%), Query Frame = 1
Query:   70 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEGDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATKQPVQAYLSAIIVYLYANDF 696
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +        +  ++ ++V+L+ ND+
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY 210          
BLAST of FC921324 vs. ExPASy Swiss-Prot
Match: SNAG_HUMAN (Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 52/209 (24.88%), Postives = 93/209 (44.50%), Query Frame = 1
Query:   70 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEGDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATKQPVQAYLSAIIVYLYANDF 696
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +        +  ++ ++V+L+ ND+
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY 210          
The following BLAST results are available for this feature:
BLAST of FC921324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SNAG_ARATH6.720e-7866.98Gamma-soluble NSF attachment protein OS=Arabidopsi... [more]
SNAG_DICDI8.920e-2231.07Gamma-soluble NSF attachment protein OS=Dictyostel... [more]
SNAG_BOVIN5.242e-1425.36Gamma-soluble NSF attachment protein OS=Bos taurus... [more]
SNAG_MOUSE1.168e-1324.88Gamma-soluble NSF attachment protein OS=Mus muscul... [more]
SNAG_HUMAN1.168e-1324.88Gamma-soluble NSF attachment protein OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionC32103F07EF RVDevelopN Citrus clementina cDNA clone C32103F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921324 ID=FC921324; Name=FC921324; organism=Citrus clementina; type=EST; length=738bp
CAAGTGCCGTGTCTGTGATTGAAGTAGAGCGGAAATCTGAGAAACAGGTG
GACTGTTGGTTCGAAGTGAGCTGCGATGGCGAGTTCCGATCCTCACAAGT
TGATGGTCAAAGCCGACAAATTAACAAAACTCAGTCTTACCAGATGGAGT
GCTGATTGGAAAAGTGCTACTCAATTGTATGAACAAGCTGCTAATGGTTT
CAGGGTTGCCAAAAATATTGAGCAAGCAAAAATTGCATTTGAGAAAGCTT
CGCAAGGACAAGAGATGCTCTCCTCACCATGGGATGCGGCTAAGCACATG
GAGTCTGCTGCTGCTTTAGCTAAGGAACTACATAATTGGAGGGAGGTTGC
TGACTTTTATAGAAAAGCATCAGAGTTGTACAATGAATGTGGGAGATCAC
AACCTGCCTCAGATGCTCTAGCAAAGGCTGCTCGTGCATTGGAAGATGCT
GTGCCAGAGGATGCTATTCAACTCTATACTGATGCATGCATAATGCTTGA
AGGGGATGACAAGGAACAAATGGCCTTTGATCTATACCGTGCCGCCACTA
ATGTTTATATAAAGCTTGAGAAGTATGCTGATGCTGCCACTTTTCTGTTG
AGATGGGGTTTGGCAGCTGATAAGTGCAATGCTACCAAACAGCCAGTGCA
GGCATATCTTAGTGCAATTATTGTGTATCTTTATGCTAATGACTTTCAGC
AGCAGAGAATGCTACATGACTGTCCCAGNTGATGCTTT
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