FC921331

Overview
NameFC921331
Unique NameFC921331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921331_ssr75 microsatellite FC921331_ssr75:75..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14293 contig Ccv1_Contig14293:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.888e-56
Identity = 108/129 (83.72%), Postives = 116/129 (89.92%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYSTFE ELAD  PVVKTSI GTRIIG     NKNGLL+PHTT DQELQHLRN LP+SVVVQRIEE+LSALGNCIACND+VALTHTDLD+ TEE+I
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELI 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 94/129 (72.87%), Postives = 108/129 (83.72%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIGR+ AGN+ GLL+P  T DQELQHLRNSLP+SV +QR+EERLSALGN I CND+VAL H D+DR TEE+I
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELI 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.893e-48
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MA R  FEN+CEVG F+KLTNAYCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIGR+C GN++GLL+P+ T DQELQH+RNSLP+SV ++R+EERLSALGN   CND+VAL H DLDR TEE++
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEIL 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.602e-47
Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIGR+C GN++GLL+P+ T DQELQH+RNSLP++V ++R+EERLSALGN   CND+VAL H DLDR TEE++
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEIL 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.602e-47
Identity = 89/129 (68.99%), Postives = 109/129 (84.50%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MA R+ FEN+ ++GVF+KLTN YCLVAIGGSE+FYS FEAEL D  PVV  ++GG RIIGRL  GN+NGLL+P++T D+ELQHLRNSLP++V + R+EERLSALGN IACND+VAL H DLD+ TEE+I
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEII 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.088e-47
Identity = 87/129 (67.44%), Postives = 105/129 (81.40%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MA R  FEN+CE+G F+KLTN+YCLVAIGGSE+FYS FE ELA   PVV  SI G RIIGR+C GN++GLL+P+ T DQELQH+RN LP+SV ++R+EERLSALGN   CND+VAL H DLDR TEE++
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEIL 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MA R  FENS E+GVFS LTN+Y LVA+GGSE+FYS FEAEL DV PVV T+IGGTRIIGRL  GN+ GLL+P +T D ELQHLRNSLP+ V +QR++ERLSALGN +ACND+VAL H D++R TEE+I
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEII 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 92/129 (71.32%), Postives = 104/129 (80.62%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MATRL +ENSC+VGVF KLTN YCLV   GS+ F  T E  LAD  PVV+TSI GTRI+GRL AGNKNGLLLP+T  DQELQ +RNSLP+ VVVQRIEE+ SALGNCIA ND+VAL H D+DR TEE+I
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEII 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.701e-42
Identity = 78/129 (60.47%), Postives = 103/129 (79.84%), Query Frame = 2
Query:  350 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MA R+ +E S +VGVF  LTN+YCLV +GG+++FYS  EAEL+D+ PVV TSI  TRI+GRL  GN++GLL+P+ T DQELQHLRNSLP+ V ++R++ERLSALGN IACNDHVA+ H ++   TE+ +
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQAL 129          
BLAST of FC921331 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.716e-41
Identity = 85/131 (64.89%), Postives = 104/131 (79.39%), Query Frame = 2
Query:  350 MATRLMFENS-CEVGVFSKLTNAYCLV-AIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTADQELQHLRNSLPESVVVQRIEERLSALGNCIACNDHVALTHTDLDRGTEEMI 736
            MATRL ++N+ CE+GVFSKLTNAYCLV A   S +F++ +E++L  V P+V TSIGG+  IG LC GNKNGLLL HT  DQELQHLR+SLP+ VVVQRIEE + ALGN IACND+VAL H  L++ TEE+I
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEII 131          
The following BLAST results are available for this feature:
BLAST of FC921331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IF6_BETVU1.888e-5683.72Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_YEAST1.311e-4972.87Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_MOUSE1.893e-4869.77Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN1.602e-4767.44Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_DROME1.602e-4768.99Probable eukaryotic translation initiation factor ... [more]
IF6_BOVIN6.088e-4767.44Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_SCHPO7.951e-4769.77Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DICDI6.731e-4671.32Probable eukaryotic translation initiation factor ... [more]
IF6_CAEEL7.701e-4260.47Eukaryotic translation initiation factor 6 OS=Caen... [more]
IF6_ARATH1.716e-4164.89Eukaryotic translation initiation factor 6 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC32103G02EF RVDevelopN Citrus clementina cDNA clone C32103G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921331 ID=FC921331; Name=FC921331; organism=Citrus clementina; type=EST; length=736bp
GAGTTAAGGTATGTTTTTGATATTTTGCGTAGAAGGGGAGTTATATCCAC
GCAATTCCCTCATTTTTTCAGTAAACAGACAGACAGACAGAAGAAATACA
CTATATTATTGTATAAATATAAACGAGGACAGGCAGAGGCATCGCTTCGT
CTGAATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTG
GGGTACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCC
TCATCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTT
TTCCGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCA
TGGCAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCC
AAGCTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTT
CTACAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAA
CATCTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAA
AATGGGCTTCTCTTGCCGCACACTACCGCAGACCAAGAACTTCAACACTT
GAGGAACAGCCTACCTGAATCAGTTGTCGTTCAGCGTATTGAAGAGAGGC
TATCTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACA
CACACAGATCTTGACAGGGGAACAGAGGAAATGATT
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