FC921386

Overview
NameFC921386
Unique NameFC921386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15440 contig Ccv1_Contig15440:32..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921386 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 64/161 (39.75%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  160 EKRGPGNVNLLASPASMGSVCQKS-SVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDS-HYPSQKNVVSGNKRGFSDAMDGFLEGK--YLSSSELLSPRAAPNLGLKSGSIQENL 630
            E+    NV++ +S  +   + + +   +KE NY+GL                      ++LKATEL LGLPGSQSP R +EL LL PA+LDEKP FPL P+ D     SQKN  SGNKRGFSD MD F E K    +    + P AA    +    + +N+
Sbjct:    4 EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKAT-ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNI 163          
BLAST of FC921386 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 53/105 (50.48%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  229 SSVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSD--SHYPSQKNVVSGNKRGFSDAMDGF 537
            S  +KERNY+GL                      LN KATELRLGLP SQSPER ++  LL P   DEK LFPL P+ D  S     KNVVSGNKRGF+D  D F
Sbjct:   16 SPCLKERNYLGLSDCSSVDSSTIPNVVGKSN---LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEF 117          
The following BLAST results are available for this feature:
BLAST of FC921386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH2.783e-2039.75Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH3.184e-1650.48Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC32104D04EF RVDevelopN Citrus clementina cDNA clone C32104D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921386 ID=FC921386; Name=FC921386; organism=Citrus clementina; type=EST; length=727bp
CTCGCCGGGGAGCTCTTTCTCTCTCGTTCTCTTCTCTCTCAAGTCTGAAG
TCTCAGCTTTGCAAATCTTCTACTTCTTCTCCGGCAAGTGATCAACAAAA
CCAACCAGGTGAGTATCAGATTTTAGATTTTGATGTCTCCACCACCTGGT
GTTGGTGAGGAGAAGAGGGGTCCTGGCAATGTCAATTTACTGGCTTCTCC
AGCCTCCATGGGCAGCGTATGCCAAAAAAGCTCGGTAATAAAAGAGCGTA
ACTACATGGGATTATCAGACTCTTCTTCAATGGACAGCTCAGTGGTCTCC
AGTGTCTCCGGTGAGAGTAGCAAGAGCAGTCTGAATCTCAAGGCTACAGA
GCTGAGGCTCGGACTTCCTGGGTCCCAGTCTCCAGAGAGAGGTTCGGAAC
TCTGCCTCCTAGGTCCTGCGCAACTGGATGAGAAGCCATTGTTCCCTTTG
CATCCAACAAGTGATAGCCACTACCCATCACAGAAGAATGTTGTTTCTGG
AAATAAAAGGGGGTTCTCTGATGCTATGGATGGGTTCTTAGAGGGGAAAT
ATCTTTCTAGTTCTGAGCTATTGTCACCCAGGGCTGCTCCAAACTTGGGG
CTGAAGTCAGGTTCTATTCAAGAGAACCTTGGGCCTCAAACCGCTAAAGG
CAAAGAGATGGCCAACCAAAAAGCAGTGCAGGAAAGGCCTCATGTTAACA
TGAGACCCATACAACCCATATGGTTCT
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