FC921390

Overview
NameFC921390
Unique NameFC921390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14300 contig Ccv1_Contig14300:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U497C_VITVI (UPF0497 membrane protein 12 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.531e-54
Identity = 104/121 (85.95%), Postives = 115/121 (95.04%), Query Frame = 3
Query:  114 MSYLGVGVSPGNVPVYRGTVMKVVDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVI 476
            MSYLGVGVSPGNVPVY GT +KVVDRR+RL ELVLRCVICGLG LAAVLVGTDTQV+ IF+IQKKAKFTDMKALVFLV+ANGIAAAYSL+QG+RC V+M++GSVLF+KPLAWAIFSGDQVI
Sbjct:    1 MSYLGVGVSPGNVPVYHGTNLKVVDRRVRLAELVLRCVICGLGILAAVLVGTDTQVKVIFTIQKKAKFTDMKALVFLVIANGIAAAYSLIQGLRCVVSMVRGSVLFSKPLAWAIFSGDQVI 121          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U497E_RICCO (UPF0497 membrane protein 14 OS=Ricinus communis GN=RCOM_0864260 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.136e-52
Identity = 99/121 (81.82%), Postives = 114/121 (94.21%), Query Frame = 3
Query:  114 MSYLGVGVSPGNVPVYRGTVMKVVDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVI 476
            MSYLGVGVSPGNVPVY G+ +KV+D+R+RL ELVLRC+ICGLG LAAVLVGTDTQV+EIFSIQKKA+FTDMKALVFLV+ANGIAAAYSL+QGVRC V M++GS LF+KPLAWAIFSGDQ++
Sbjct:    1 MSYLGVGVSPGNVPVYHGSNLKVIDKRVRLAELVLRCLICGLGVLAAVLVGTDTQVKEIFSIQKKARFTDMKALVFLVIANGIAAAYSLLQGVRCVVGMVRGSALFSKPLAWAIFSGDQMM 121          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U4975_POPTR (UPF0497 membrane protein 5 OS=Populus trichocarpa GN=POPTRDRAFT_575900 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.530e-52
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 3
Query:  114 MSYLGVGVSPGNVPVYRGTVMKVVDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVI 476
            MSYLGVGVSPGNVPVY GT  KV+DRR+RL ELVLRCVIC LG LAAVLVGTDTQV+EIFSIQKKA+FTDMKALVFLV ANGIAAAYS VQGVRC V M+KGSVLF+KPLAW IFSGDQ++
Sbjct:    1 MSYLGVGVSPGNVPVYHGTNSKVIDRRVRLAELVLRCVICCLGVLAAVLVGTDTQVKEIFSIQKKARFTDMKALVFLVAANGIAAAYSFVQGVRCVVGMVKGSVLFSKPLAWVIFSGDQMM 121          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U4978_ARATH (UPF0497 membrane protein At2g35760 OS=Arabidopsis thaliana GN=At2g35760 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.289e-42
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  114 MSYLGVGVSPGNVPVYRGTVMKVVDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVIFDCC 488
            MSYLGVGVSPGNV     T MK++DR++R+ EL+LRC++C L  +AA+L+ TD QVREIF IQKKAKFTDMKALV LVV NGIAA YSLVQ VRC V ++KG VLF+KPLAWAIF GDQ +   C
Sbjct:    1 MSYLGVGVSPGNVSGST-TKMKLIDRKVRVTELILRCLVCVLALVAAILIATDVQVREIFMIQKKAKFTDMKALVLLVVVNGIAAGYSLVQAVRCVVGLMKGRVLFSKPLAWAIFFGDQAVAYLC 124          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U4971_SORBI (UPF0497 membrane protein Sb01g044070 OS=Sorghum bicolor GN=Sb01g044070 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.059e-34
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 3
Query:  132 GVSPGNVPVY----RGTVMKVVDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVI 476
            GVSPGNVPV      G V   ++RR+R  EL +RC  CGL  LAA L+G D Q R IFS++K A+FTDM++LVFLV+ANG+AA YSL+QG RC V++L G VL N+P+AWAIFS DQV+
Sbjct:   13 GVSPGNVPVCYYGAAGRVPAALERRVRAAELFMRCAACGLAVLAAALLGADRQTRTIFSVEKTARFTDMQSLVFLVIANGMAACYSLLQGARCLVSILTGGVLINRPMAWAIFSCDQVM 131          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U497S_ARATH (UPF0497 membrane protein At4g16442 OS=Arabidopsis thaliana GN=At4g16442 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 3
Query:  174 MKVVDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVI 476
            MK++DRR+RL EL+LRC I     LA +LV TDT+V+ IF+I+K AK+TDMKA+VFLVVANGIAA YSL+Q VRC V  +KG VLF+KPLAWA FSGDQ +
Sbjct:    1 MKLIDRRMRLTELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAAVYSLLQSVRCVVGTMKGKVLFSKPLAWAFFSGDQAM 101          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U4975_PICSI (UPF0497 membrane protein 5 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 55/98 (56.12%), Postives = 77/98 (78.57%), Query Frame = 3
Query:  183 VDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQVI 476
            V++R+++ E++LR  +  L  +AAV VGTDTQ R IF+I+KKAK++DMKALVFLVV NGI A+YSL+QG+RC +++   S L +KPLAW IF+ DQ +
Sbjct:   63 VEKRLKIGEVILRFAMIALALVAAVRVGTDTQTRTIFTIEKKAKYSDMKALVFLVVMNGIVASYSLLQGLRCVLSIYTQSPLTSKPLAWLIFALDQTM 160          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U4979_MAIZE (UPF0497 membrane protein 9 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  186 DRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVR--CTVAMLKGSVLFNKP-----LAWAIFSGDQVI 476
            +R++ + E+ LR V+CGLGALAA LV TDTQ R  FS+QKKA +TDMKA+V LV A   AA YSL+Q  R  C VA+L+ S+   +P     LAW +F+ DQ +
Sbjct:   12 ERKVAVAEVALRAVLCGLGALAAALVATDTQTRTFFSLQKKATYTDMKAMVLLVAAAAAAAGYSLLQAARCCCCVALLRTSI---RPRARLLLAWCVFACDQAL 112          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U497G_ORYSJ (UPF0497 membrane protein Os12g0514300 OS=Oryza sativa subsp. japonica GN=Os12g0514300 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.554e-20
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  183 VDRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAML--KGSVLFNKPLAWAIFSGDQVI 476
            ++R+ ++ E+ LRC +C L ALAA LVGT +Q R  FS++KKA+FTDMKALV LV A+G AA YSL+Q  RC  A     GS      +AW++FS DQ +
Sbjct:    7 LERKAKVAEVALRCAVCALAALAAALVGTGSQTRTFFSLEKKARFTDMKALVLLVAAHGAAAVYSLLQLARCAAAAAWKGGSNGGAAVVAWSVFSCDQAV 106          
BLAST of FC921390 vs. ExPASy Swiss-Prot
Match: U497I_SORBI (UPF0497 membrane protein Sb08g016550 OS=Sorghum bicolor GN=Sb08g016550 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  186 DRRIRLVELVLRCVICGLGALAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQ-GVRCT--VAMLKG---SVLFNKPLAWAIFSGDQVI 476
            +R++++ E+ LR ++CGLGALAA LV TDTQ R  FS+QKKA +TDMKA+VFLV A  +AA YSL+Q   RC    AM  G        + L+W +FS DQ +
Sbjct:   14 ERKVKVAEVALRALLCGLGALAAALVATDTQTRTFFSLQKKASYTDMKAMVFLVDAAAVAAGYSLLQLAARCCGGGAMSSGRGDGGGRGRALSWCVFSCDQAL 116          
The following BLAST results are available for this feature:
BLAST of FC921390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
U497C_VITVI3.531e-5485.95UPF0497 membrane protein 12 OS=Vitis vinifera GN=G... [more]
U497E_RICCO1.136e-5281.82UPF0497 membrane protein 14 OS=Ricinus communis GN... [more]
U4975_POPTR2.530e-5284.30UPF0497 membrane protein 5 OS=Populus trichocarpa ... [more]
U4978_ARATH5.289e-4268.00UPF0497 membrane protein At2g35760 OS=Arabidopsis ... [more]
U4971_SORBI4.059e-3459.66UPF0497 membrane protein Sb01g044070 OS=Sorghum bi... [more]
U497S_ARATH1.444e-3166.34UPF0497 membrane protein At4g16442 OS=Arabidopsis ... [more]
U4975_PICSI1.309e-2456.12UPF0497 membrane protein 5 OS=Picea sitchensis PE=... [more]
U4979_MAIZE1.146e-2051.92UPF0497 membrane protein 9 OS=Zea mays PE=2 SV=1[more]
U497G_ORYSJ2.554e-2051.00UPF0497 membrane protein Os12g0514300 OS=Oryza sat... [more]
U497I_SORBI1.073e-1850.49UPF0497 membrane protein Sb08g016550 OS=Sorghum bi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32104D08EF RVDevelopN Citrus clementina cDNA clone C32104D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921390 ID=FC921390; Name=FC921390; organism=Citrus clementina; type=EST; length=693bp
GGGGTAAAGGTTAGGATCTTTTTCTGGATTTGAGAGCTGTGTCCTGAACT
CTTCTATGCTCCTTCTGTTCAGATTTCTTCCTTTAAGTGTTAAATCTTTG
GAAGAAAAAAAAAATGAGTTATTTGGGTGTTGGTGTTAGTCCAGGGAATG
TGCCAGTGTATCGTGGCACCGTAATGAAGGTTGTTGATAGGAGAATAAGG
CTTGTAGAGTTGGTTTTGAGGTGTGTGATCTGTGGTTTAGGTGCTCTTGC
TGCTGTTCTTGTTGGGACTGATACCCAAGTCAGAGAAATCTTCTCAATTC
AAAAGAAAGCTAAGTTTACAGACATGAAAGCTCTTGTGTTTTTGGTGGTA
GCAAATGGAATAGCTGCAGCCTACTCTTTAGTGCAAGGGGTGCGCTGTAC
CGTTGCTATGCTCAAGGGAAGTGTGCTCTTTAACAAGCCACTAGCCTGGG
CAATTTTCTCTGGAGATCAGGTAATATTTGATTGCTGCCAATTCTAATTG
ATTGTTCTCCTTCTATTTCTCATCAGGTGAAATTTCCATGATTGTCCATG
AGTTGGTTGTCACTGATAACGGAGTGCTTCATATGATAATTGAGTTTTTT
AGGTGAAGGCAGACTATATTTGACTGGGTGTTGGATATGGGATATTACAA
GTCGTAATTTTACATCACACCTCCCTTTCCCGGATCTGCTTCC
back to top