FC921409

Overview
NameFC921409
Unique NameFC921409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921409_ssr144 microsatellite FC921409_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14618 contig Ccv1_Contig14618:54..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921409 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.952e-69
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 2
Query:  176 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAV 691
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL +
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLI 172          
BLAST of FC921409 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.174e-61
Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 2
Query:  176 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGL 697
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   L
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSL 174          
BLAST of FC921409 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 107/174 (61.49%), Postives = 129/174 (74.14%), Query Frame = 2
Query:  176 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGL 697
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   L
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTAL 174          
The following BLAST results are available for this feature:
BLAST of FC921409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH3.952e-6973.26PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH5.174e-6160.34PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH1.664e-5961.49PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC32104F06EF RVDevelopN Citrus clementina cDNA clone C32104F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921409 ID=FC921409; Name=FC921409; organism=Citrus clementina; type=EST; length=698bp
GATTCAATTTAATTCTCTTCATCACATCGCAGGAAACCCACAGCCACAGC
CTCGACTCTTTCTTAATCTGCCTAGGGTTTCGCGGATCATTTTATTTTGC
ACAAAATAAATCGTTTTCTAGGGTTTCGGAAGAGCGGAATATTATAATAA
TAATAACAATAGTAGTAATCAAGCGATGGATTGGGGAAACGTAACAGCAG
AAGATCTTATCGACGCGCTTCGTGAAGTTGACTGGTCGTCTCCACCGCGT
CCTCTCTCCGAGTTCTTCTCCAGGTTCACCGTTCCGAGATCCTCCGCCAA
ATGGAACAGCCGATTGAAATGCAATCTTTACTACTACCGAACAAACTACT
TTATCATGATTACTGTCATTCTTGGGTTGGGTTTCCTAAGGAGACCTGTT
GCTATTATTGCTGCTCTTTTGACAGCCCTTAGTATTGCATTTCTCAATGA
CAGCTTTGCAGGTACTTTCAATGAGAAGGTGACAAGAACTGTGAGGCAAT
TTTCTCCACATCTAGCTGCAAAGATGAGGCCTCCTCTTACACCTGTTATT
CGTGGGCGCCCATCAGCGAAAAGAGCAATCTATATATGTGGTCGGCCTCG
TTGGGTGTTTGTCTTAATATTTTCTTGCGTAAGTTTCATCCTTTGGTATG
TTTCCTGTGGTCTTTTGACTGTTCTATGGGCACTTGCTGTTGGACTTC
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