FC921410

Overview
NameFC921410
Unique NameFC921410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.015e-28
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRY-APFVEEEW-DDGMATFP 284
            K TGKDREIR  S+++GMKKTLV+H GRAP G+RTNWVMHEYRL +E+ ++ G    +YVLCR+F K+  GP NG +Y AP++EEEW +DGM   P
Sbjct:   93 KTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEEDGMTYVP 188          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC74_ORYSJ (NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGN 230
            K+TGKDR I+   Q IG KKTLVFH GR P G+RT W+MHEY + E E +       +YVLCR+  +N+  P NGN
Sbjct:   93 KSTGKDRAIKMGKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYIDERECQACPDMKDAYVLCRITKRNDWIPGNGN 168          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC22_ARATH (NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.314e-15
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEF---EQLGPGLASYVLCRVFHKNNIG 215
            KATGKDR I R+ +L+GM+KTLVF+ GRAP G++T+WVMHE+RL          L      +VLCRVFHKN  G
Sbjct:  102 KATGKDRTILRKGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEG 175          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNN 209
            KATG D+ I  E Q +G+KK LVF+ G+AP G +TNW+MHEYRL+E         L  +VLCR++ K +
Sbjct:   96 KATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 164          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC7_ARATH (NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHK 203
            KATG+D+ I     LIGM+KTLVF+ GRAP+GQ+++W+MHEYRL  E  E   P    +V+CRVF K
Sbjct:   92 KATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRL--ETDENGTPQEEGWVVCRVFKK 156          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNN 209
            KATG D+ I  + + +G+KK LVF++G+AP G +TNW+MHEYRL+E         L  +VLCR++ K +
Sbjct:   96 KATGTDKIITADGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIYKKTS 164          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.103e-13
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHK 203
            KATG D+ I  E + +G+KK LVF+ G+AP G +TNW+MHEYRL+E         L  +VLCR++ K
Sbjct:   96 KATGTDKVISTEGRRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 162          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 KATGKDREIRRES--QLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHK 203
            KATGKD+E+      QL+GMKKTLVF+ GRAP G +T WVMHEYRL E +          +V+CRVF+K
Sbjct:  104 KATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLKTKWVMHEYRL-ENDHSHRHTCKEEWVICRVFNK 171          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC77_ORYSJ (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 KATGKDREIRRE----------------SQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-----SYVLCRVFHK 203
            KATGKDREI R+                 QL+GMKKTLVF+ GRAP G +TNWVMHE+RL         P L       +V+C+VFHK
Sbjct:  101 KATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL-HANLHNHHPNLRLNPKDEWVVCKVFHK 187          
BLAST of FC921410 vs. ExPASy Swiss-Prot
Match: NAC66_ARATH (NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 3
Query:    3 KATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVE--------------EEFEQLGPGLASYVLCRVFHKNNI 212
            KATG+D+ I      IGM+KTLVF+ GRAP GQ+++W+MHEYRL E              E  + +G     +V+CRVF KNN+
Sbjct:   96 KATGRDKTIYTNGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSD-EGWVVCRVFKKNNL 178          
The following BLAST results are available for this feature:
BLAST of FC921410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NAC78_ARATH3.015e-2860.42NAC domain-containing protein 78 OS=Arabidopsis th... [more]
NAC74_ORYSJ7.702e-1652.63NAC domain-containing protein 74 OS=Oryza sativa s... [more]
NAC22_ARATH1.314e-1555.41NAC domain-containing protein 21/22 OS=Arabidopsis... [more]
NAC19_ARATH2.097e-1349.28NAC domain-containing protein 19 OS=Arabidopsis th... [more]
NAC7_ARATH3.578e-1355.22NAC domain-containing protein 7 OS=Arabidopsis tha... [more]
NAC72_ARATH4.673e-1346.38NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC55_ARATH6.103e-1349.25NAC domain-containing protein 55 OS=Arabidopsis th... [more]
NAC31_ARATH2.319e-1255.07Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thal... [more]
NAC77_ORYSJ3.029e-1247.73NAC domain-containing protein 77 OS=Oryza sativa s... [more]
NAC66_ARATH3.029e-1245.24NAC domain-containing protein 66 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC32104F07EF RVDevelopN Citrus clementina cDNA clone C32104F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921410 ID=FC921410; Name=FC921410; organism=Citrus clementina; type=EST; length=761bp
GGAAAGCAACAGGGAAGGATCGTGAGATTCGCCGGGAGTCGCAACTCATT
GGAATGAAGAAGACGCTTGTGTTTCATAGTGGGCGTGCCCCTGATGGGCA
GCGGACCAATTGGGTTATGCATGAGTACCGCCTTGTGGAAGAAGAATTCG
AGCAATTGGGGCCTGGACTGGCTTCATATGTGCTGTGTAGAGTATTCCAC
AAGAACAACATAGGGCCACCCAATGGGAATCGATATGCACCATTCGTTGA
GGAGGAATGGGATGATGGCATGGCAACTTTTCCAGGAGAAGATGCTGCAG
ATGAGGTGGTAGCAGGTGATGATGTTGGTACTGAAAGGAATGCTGGCGAA
AGGATGCGTGTTGAGCAGGATTCTCAATCCATCAATAAGGAGCCTCTGAA
TATTAATGAACTTCCAAAAGATGCTCAAAATGATTTACTGGATTGCAAGA
GGGAAAGGACAGACGGTTGTCCTTCGCTATGTGTGTTAAATACACAGGCA
CCTCTTCCTCTTCTCCAATACAAAAGAAGAAGGCAGAATGATTCAGGTTC
TAACCGATCAAATGGTTCAGGTAATTCATCTGGAGCAGGCCAGGATCCTT
CGTCATCTACCACCACAACAGCTGAAACAGCAACGATGATGGCGACAAAT
TCAGCAAACACAGCAGCAATTTCTGCGTTGTTGGAGTTCTCTCTGATGGA
GTCTATTGAACCAGAGAGACATCTTGTGTCCCACAGCTGCTCCATTTGAG
CTATGATTTGA
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