FC921414

Overview
NameFC921414
Unique NameFC921414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.401e-101
Identity = 177/199 (88.94%), Postives = 189/199 (94.97%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPD-MQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFI+VQKRHHTRLFANNHRD++STDRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY+EP+ MQ+NGS    G  +TK+T  VG+ GV+PLPALKENVKRVMFYC
Sbjct:  794 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGS---PGKKNTKTT-TVGDVGVKPLPALKENVKRVMFYC 988          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.104e-97
Identity = 167/198 (84.34%), Postives = 181/198 (91.41%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF++VQKRHHTRLFANNH+DRSSTD+SGNILPGTVVDSKICHP+EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTAD +Q+LTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEP+M EN        T++KS+     + V+PLPA+KE VKRVMFYC
Sbjct:  789 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSEN-------QTTSKSSTGTNGTSVKPLPAVKEKVKRVMFYC 979          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 353.214 bits (905), Expect = 7.994e-97
Identity = 167/204 (81.86%), Postives = 178/204 (87.25%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTS------TKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF++VQKRHHTRLFANNH D+ + DRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+  ++GS      TS       +S R  G   VRPLPALKENVKRVMFYC
Sbjct:  915 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC 1118          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.781e-96
Identity = 165/205 (80.49%), Postives = 178/205 (86.83%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHT-------STKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVL YELDAIRKACASLE +YQPPVTF++VQKRHHTRLFANNH+D+ + DRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADG+Q+LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEPD  ++GS     HT         +ST+  G   VRPLP LKENVKRVMFYC
Sbjct:  878 RDGVSEGQFYQVLFYELDAIRKACASLEADYQPPVTFVVVQKRHHTRLFANNHKDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGARSTKPAGNVAVRPLPDLKENVKRVMFYC 1082          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.154e-95
Identity = 170/204 (83.33%), Postives = 180/204 (88.24%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGS-TDGS----GHTSTKSTRAVG-ESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVLLYELDAIRKACASLE  YQPPVTF++VQKRHHTRLFA NH DR S DRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADG+QSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+  ++GS   GS    G  + +STR     + VRPLPALKENVKRVMFYC
Sbjct:  845 RDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC 1048          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.772e-95
Identity = 163/201 (81.09%), Postives = 181/201 (90.05%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGST---DGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVLL+ELDAIRKACASLE NYQP VTFI+VQKRHHTRLFA+NH D++S DRSGNILPGTVVDSKICHPTEFDF+LCSHAGI+GTSRPAHYHVLWDENNFTAD +Q+LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYME D  ++GS     G G ++++STRA G   VRPLPALK++VK VMFYC
Sbjct:  838 RDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAGGGAVRPLPALKDSVKNVMFYC 1038          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.411e-93
Identity = 165/205 (80.49%), Postives = 180/205 (87.80%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGS-TDGSG------HTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQFYQVLLYEL+AIRKACASLE NYQP VTFI+VQKRHHTRLFA+NH D++S DRSGNILPGTVVDSKICHPTEFDFYLCSHAGI+GTSRPAHYHVLWDENNFTAD +Q LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEPD  ++ S   G G       +ST  TRA G + V+PLPALK++VKRVMFYC
Sbjct:  807 RDGVSEGQFYQVLLYELNAIRKACASLETNYQPKVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFTADALQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSSSVVSGPGVRGPLSGSSTSRTRAPGGAAVKPLPALKDSVKRVMFYC 1011          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.497e-82
Identity = 147/198 (74.24%), Postives = 164/198 (82.83%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQF  VLL+E+DAIRKACASLE  Y PPVTF++VQKRHHTRLF   H  R  TD+SGNILPGTVVD +ICHPTEFDFYLCSHAGIQGTSRP HYHVL+DEN+FTAD +QSLTNNLCYTYARCTR+VSVVPPAYYAHLAAFRAR+Y+E +  + GST GS   S ++    G   VR LP +KENVK VMFYC
Sbjct:  864 RDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGS---SGQAVAREGPVEVRQLPKIKENVKDVMFYC 1058          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.675e-78
Identity = 143/198 (72.22%), Postives = 161/198 (81.31%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDGVSEGQF QVLL+E+ AIRKAC SL+ NY P VTF+IVQKRHHTRLF   H +R  TD+SGNI PGTVVD+KICHP EFDFYL SHAGIQGTSRPAHYHVL DEN FTAD +Q LTNNLCYTYARCT+SVS+VPPAYYAHLAAFRAR+YME +M + GS+      S  ST  VG+  +  LPA+K+NVK VMFYC
Sbjct:  806 RDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSS-----RSRSSTTGVGQV-ISQLPAIKDNVKEVMFYC 997          
BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.779e-76
Identity = 137/198 (69.19%), Postives = 159/198 (80.30%), Query Frame = 1
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 594
            RDG+SEGQF QVLLYE+DAIRKACASL+  Y PPVTF++VQKRHHTRLF  N RD    DRSGNILPGTVVD+ ICHP+EFDFYLCSH+GI+GTSRP HYHVL DEN F AD +Q+LT NL YTYARCTR+VS+VPPAYYAHL AFRAR+YME +  + GS   S   +T++ R+      +PLP +KENVKR MFYC
Sbjct:  862 RDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDMM--DRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDEHSDQGS---SSSVTTRTDRS-----TKPLPEIKENVKRFMFYC 1049          
The following BLAST results are available for this feature:
BLAST of FC921414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PINH_ARATH2.401e-10188.94Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
PNH1_ORYSJ2.104e-9784.34Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGO1B_ORYSJ7.994e-9781.86Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1A_ORYSJ1.781e-9680.49Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGO1_ARATH1.154e-9583.33Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1D_ORYSJ9.772e-9581.09Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGO1C_ORYSJ1.411e-9380.49Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ2.497e-8274.24Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGOL_ARATH1.675e-7872.22Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO12_ORYSJ7.779e-7669.19Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC32104F12EF RVDevelopN Citrus clementina cDNA clone C32104F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921414 ID=FC921414; Name=FC921414; organism=Citrus clementina; type=EST; length=719bp
AGGGATGGAGTAAGTGAAGGGCAATTTTATCAAGTTCTACTTTATGAGTT
GGATGCGATTCGAAAGGCCTGTGCTTCTCTTGAGCCGAATTATCAGCCAC
CTGTGACTTTCATAATTGTACAAAAACGACACCATACTCGGTTATTCGCT
AATAACCACAGGGATAGGAGCAGCACAGATAGGAGTGGGAACATTCTGCC
TGGCACTGTGGTTGATTCTAAAATATGTCATCCAACAGAATTTGATTTTT
ACCTATGCAGCCATGCTGGTATTCAGGGCACAAGTCGACCGGCACATTAC
CATGTGCTATGGGATGAGAACAATTTTACAGCCGACGGAATCCAGTCTTT
GACAAACAATCTTTGTTACACATACGCAAGATGCACACGCTCTGTCTCTG
TGGTTCCTCCAGCATATTATGCACATTTAGCTGCTTTCCGCGCCCGTTTC
TACATGGAACCAGACATGCAGGAGAATGGCTCGACCGATGGCAGTGGTCA
TACCTCCACTAAGAGCACTCGGGCGGTAGGAGAGTCTGGTGTCCGGCCTT
TGCCAGCATTGAAAGAGAACGTGAAGAGGGTGATGTTTTATTGTTAAGAT
GGGGGATAAGGAGTTGATAGTAGCAGGGGAAGAGTAGTAGCTTGGGGATA
TCAATGCAGCAATCACGTTCATTTCCAAATTTNCTCTGTAATGTATGATC
ATGAAGATTTGGCATGCTG
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