FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5726 contig Ccv1_Contig5726:64..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 6.632e-79
Identity = 144/204 (70.59%), Postives = 162/204 (79.41%), Query Frame = 1
Query:   37 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATE-DLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            MSNIVVLDNGGGLIKAG GGERDP   IPNC+Y+PLSSKKFIHPSP    + E DLTSAAV RPIDRGYLINSDLQR+IW+HLF               TE   ++PS+QR TDELVFEDF F SL++A P SLVHLYEASR+P  +LS+TQCSLVVDCGFSFTHA PV  NFT+N+A+KRIDL GKA TNYLKELVSYR+I +
Sbjct:    1 MSNIVVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTTLSDEIDLTSAAVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGGKAFTNYLKELVSYRSINV 204          

HSP 2 Score: 23.0978 bits (48), Expect = 6.632e-79
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  642 VMDETFIIDD 671
            VMDETF++DD
Sbjct:  204 VMDETFLVDD 213          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.288e-60
Identity = 115/202 (56.93%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   40 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            S +VVLDNGGGL+KAG GG+ +P   +PNCM +P  SKK++      A    D+T   + RPIDRGYLIN ++QR++W  +                 EP F  P++Q ATDELVFE+  FKSL VAD PSLVHLYEASR+P   L   QCSLVVDCGFSFTHA+PV QNFT+NYAV+R+DL GKALTNYLKEL+SYR++ +
Sbjct:    5 SGVVVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPPGSKKWLVADQLQAQDV-DVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQP--SLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYRSLNV 203          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.288e-60
Identity = 115/202 (56.93%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   40 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            S +VVLDNGGGL+KAG GG+ +P   +PNCM +P  SKK++      A    D+T   + RPIDRGYLIN ++QR++W  +                 EP F  P++Q ATDELVFE+  FKSL VAD PSLVHLYEASR+P   L   QCSLVVDCGFSFTHA+PV QNFT+NYAV+R+DL GKALTNYLKEL+SYR++ +
Sbjct:    5 SGVVVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPPGSKKWLVADQLQAQDV-DVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQP--SLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYRSLNV 203          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_CRYNE (Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 71/203 (34.98%), Postives = 104/203 (51.23%), Query Frame = 1
Query:   46 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX-TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSET------QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            ++++DNG   IKAG  G       +PN + R  + K+            +DL+     RP ++G L+N D +R IW  LF                TEP F LP+I    D+++FE+F F+S F   P +L+        PYG L E+      QC++V+D G+S+TH  P+     V   VKRID+ GK LTN+LK L+S+R
Sbjct:    6 VLIIDNGAYEIKAGISGVDWEPRVLPNSIARSRTEKRVYVGDEI--DNCKDLSGIVYRRPFEKGMLVNWDAERIIWDRLFSPSVLNINPTETSLLVTEPYFNLPNIAETYDQMIFEEFEFQSYFRCAPAALI--------PYGGLYESDQGIPPQCTIVIDMGYSYTHVVPIRDGQIVWEHVKRIDVGGKLLTNHLKHLISFR 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_DICDI (Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   25 SSSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX-TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSL--VHL------YEASRRPYGL------LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +S+  + ++++DNGG  +K        P + +PN + +  + K  I           D +      P+++GY+ N  L+++IW + F                TE   +L  +++   E+V+E + FKSL++    +L  VH+      Y+  +    L      L ++ C LVVDCG+S TH  P FQN  +NYA+KR ++ GK LTNYLKE+VS+R
Sbjct:   23 ASNTNNKVLIIDNGGHTLKIATNNPSQPHIIVPNQVGKVKNEKHQIMGEELINY--NDPSEVRSRNPMEKGYITNWGLEKEIWDYAFKRDDMKIKPQDYNLLLTEAPNSLDDLRKTMYEVVYEQYKFKSLYLTTSSTLGLVHIKQQLLQYQQQQHQPPLDASMISLLKSPCHLVVDCGYSSTHIIPHFQNTRLNYAIKRFNIGGKLLTNYLKEIVSFR 238          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_SCHPO (Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 67/201 (33.33%), Postives = 98/201 (48.76%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX--TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHL----YEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +VLDNG   IKAG  G +   V IPNC+ R     +    +  A     D T+    R  ++GYL++   +  +W  +                  T+P+F +PSI+  T +LVFE+F F +     P  L+      +  ++         +C LV+D G+SFTH  PV        AVKR+D+ GK LTNYLKE++SYR
Sbjct:    8 IVLDNGAYHIKAGFAGGK--VVEIPNCLTRSKDGNRLFLGNELANC--NDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 61/198 (30.81%), Postives = 101/198 (51.01%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX-TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            +VLDNG    K G+    D    IPNC +R  +++     +       +D +      P  +GYL+N D+QR +W +LF                TEP F   SIQ + +E++FE++ F+++   +  +L     ++ R +       C ++VD G+SFTH  P  ++     A+ RI++ GK LTN+LKE++SYR +
Sbjct:    4 LVLDNGAYNAKIGYS--HDSVSVIPNCQFRSKTARLKTFTA-NQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGAL-----SAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQL 193          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 61/198 (30.81%), Postives = 101/198 (51.01%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX-TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            +VLDNG    K G+  E      IPNC +R  +++     +       +D +      P  +GYL+N D+QR +W +LF                TEP F   SIQ + +E++FE++ F+++   +  +L     ++ R +       C ++VD G+SFTH  P  ++     A+ RI++ GK LTN+LKE++SYR +
Sbjct:    4 LVLDNGAYNAKIGYSHEN--VSVIPNCQFRSKTARLKTFTA-NQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGAL-----SAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQL 193          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 62/202 (30.69%), Postives = 94/202 (46.53%), Query Frame = 1
Query:   46 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX-TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHL-YEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            +VVLDNG    K G   + +P V +PNC+ +  S ++             D ++        RGYL+N   Q+ +W ++F                TEP     SIQ AT E++FE++    ++      L    Y A       +    C +++D G+SFTH  P      V   ++RID+ GKALTN LKEL+SYR + +
Sbjct:    5 VVVLDNGAHTAKVGLANQDEPHV-VPNCIMKAKSERRRAFVG-NQIDECRDTSALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNC-IIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYRHLNV 203          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 60/198 (30.30%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX-TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            +VLDNG    K G+         IPNC +R  +++     +       +D +      P  +GYL+N D+QR +W +LF                TEP F   SIQ + +E++FE++ F+++   +  +L     ++ R +       C ++VD G+SFTH  P  ++     A+ RI++ GK LTN+LKE++SYR +
Sbjct:    4 LVLDNGAYNAKIGYSHAH--VSVIPNCQFRSKTARLKTFTA-NQLDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFVDTNIIITEPYFNFSSIQESMNEILFEEYQFQAVLRVNAGAL-----SAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQL 193          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ARP6_ARATH6.632e-7970.59Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP6_ORYSJ5.288e-6056.93Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI5.288e-6056.93Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP6_CRYNE2.479e-2534.98Actin-like protein ARP6 OS=Cryptococcus neoformans... [more]
ARP6_DICDI3.958e-2330.73Actin-related protein 6 OS=Dictyostelium discoideu... [more]
ARP6_SCHPO6.751e-2333.33Actin-like protein arp6 OS=Schizosaccharomyces pom... [more]
ARP6_MOUSE1.078e-2030.81Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_HUMAN1.839e-2030.81Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP6_DROME6.987e-2030.69Actin-like protein 13E OS=Drosophila melanogaster ... [more]
ARP6_CHICK9.125e-2030.30Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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