FC921429

Overview
NameFC921429
Unique NameFC921429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14331 contig Ccv1_Contig14331:103..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921429 vs. ExPASy Swiss-Prot
Match: FAAA_DICDI (Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.603e-53
Identity = 107/195 (54.87%), Postives = 132/195 (67.69%), Query Frame = 3
Query:   81 LQSFIEVEPDSHFPIQNLPYGVFKPEPASMARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANPVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF-APSGNSPPPFGP 662
            L+SFIEV  DSHFPIQNLPYGVFKP     AR GVAIG++V DLS ++   LF+G  LKD+  F Q NLN F+SLG+  W EAR  +Q LLSS  +T+RDN   R+K    +  V MLLP  IGDYTDF++S  HA N G +FRG  N +  NW HLP+ YHGR+SS+V+SGT + RP GQ  +   +S P F P
Sbjct:    4 LKSFIEVSEDSHFPIQNLPYGVFKPTLNDQARIGVAIGDFVCDLSVLADLKLFDGK-LKDTKVFHQENLNSFMSLGKELWSEARKTIQNLLSSETSTIRDNKEYREKIFHSISSVTMLLPARIGDYTDFYASKEHATNVGIMFRGKENALMPNWVHLPVGYHGRSSSIVVSGTPLKRPWGQTKSDEPDSLPTFNP 197          
BLAST of FC921429 vs. ExPASy Swiss-Prot
Match: FAAA_BOVIN (Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.039e-52
Identity = 105/192 (54.69%), Postives = 124/192 (64.58%), Query Frame = 3
Query:   87 SFIEVEPDSHFPIQNLPYGVFKPEPASMARPGVAIGEYVLDLSEISKAGLFNGPILKD-SDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANPVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 659
            SF+ V  DS FPI NLPYGVF        R GVAIG+ +LDLS I    LF GPIL    D F +P LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP  IGDYTDF+SS HHA N G +FRG  N +  NW HLP+ YHGRASSVV+SGT I RP GQ  P  + PP +G
Sbjct:    2 SFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKH--LFTGPILSGHQDVFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPATIGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQMRPDDSKPPVYG 191          
BLAST of FC921429 vs. ExPASy Swiss-Prot
Match: FAAA_RAT (Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.959e-51
Identity = 104/192 (54.17%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   87 SFIEVEPDSHFPIQNLPYGVFKPEPASMARPGVAIGEYVLDLSEISKAGLFNGPIL-KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANPVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 659
            SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I    LF GP+L K    F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP  IGDYTDF+SS+ HA N G +FRG  N +  NW HLP+ YHGRASSVV+SGT I RP GQ  P  + PP +G
Sbjct:    2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPVLSKHQHVFDETTLNSFMGLGQAAWKEARASLQNLLSASQAQLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSLQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMRPDNSKPPVYG 191          
BLAST of FC921429 vs. ExPASy Swiss-Prot
Match: FAAA_MOUSE (Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.658e-50
Identity = 103/192 (53.65%), Postives = 123/192 (64.06%), Query Frame = 3
Query:   87 SFIEVEPDSHFPIQNLPYGVFKPEPASMARPGVAIGEYVLDLSEISKAGLFNGPIL-KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANPVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 659
            SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I    LF GP L K    F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP  IGDYTDF+SS  HA N G +FRG  N +  NW HLP+ YHGRASS+V+SGT I RP GQ  P  + PP +G
Sbjct:    2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYG 191          
BLAST of FC921429 vs. ExPASy Swiss-Prot
Match: FAAA_HUMAN (Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.658e-50
Identity = 104/192 (54.17%), Postives = 122/192 (63.54%), Query Frame = 3
Query:   87 SFIEVEPDSHFPIQNLPYGVFKPEPASMARPGVAIGEYVLDLSEISKAGLFNGPIL-KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANPVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 659
            SFI V  DS FPI NLPYGVF        R GVAIG+ +LDLS I    LF GP+L K  D F QP LN F+ LG+ AWKEAR  LQ LLS ++A LRD+  LR+ + +      M LP  IGDYTDF+SS  HA N G +FR   N +  NW HLP+ YHGRASSVV+SGT I RP GQ  P  + PP +G
Sbjct:    2 SFIPVAEDSDFPIHNLPYGVFSTRGDPRPRIGVAIGDQILDLSIIKH--LFTGPVLSKHQDVFNQPTLNSFMGLGQAAWKEARVFLQNLLSVSQARLRDDTELRKCAFISQASATMHLPATIGDYTDFYSSRQHATNVGIMFRDKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMKPDDSKPPVYG 191          
BLAST of FC921429 vs. ExPASy Swiss-Prot
Match: FAAA_EMENI (Fumarylacetoacetase OS=Emericella nidulans GN=fahA PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.191e-40
Identity = 86/202 (42.57%), Postives = 132/202 (65.35%), Query Frame = 3
Query:   81 LQSFIEVEPDSHFPIQNLPYGVFKPEPASMARPGVAIGEYVLDLSEISKAGLFNG-PILKDS-DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEA---TLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANPVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFA--PSGNSP-PPFGP 662
            + S++++  +S F + N+P+G+      S   P +AIG+Y LDLS+ + +G F+  P+++   + F Q  LN F +LGRP  ++ R+ +QK+ S+       LRDNA L++++L+P+ +V   LPM+IGDYTDF++ ++HA N G +FRGP N +  N+ HLP+AYHGRASSVV SGT + RP+GQ    P+ N   P F P
Sbjct:    1 MASWLQIPKNSPFSLANIPFGIISSSKLSSRVPAIAIGDYALDLSKFASSGGFSQLPVIQPHLNVFNQSTLNAFAALGRPVHRQVREYIQKVFSTETPFPQILRDNAALQKEALLPLSEVTNHLPMQIGDYTDFYAGLNHAYNVGVLFRGPDNALQPNYKHLPVAYHGRASSVVTSGTPLHRPQGQILTNPAANPKLPTFSP 202          
The following BLAST results are available for this feature:
BLAST of FC921429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAAA_DICDI1.603e-5354.87Fumarylacetoacetase OS=Dictyostelium discoideum GN... [more]
FAAA_BOVIN1.039e-5254.69Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1[more]
FAAA_RAT1.959e-5154.17Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE... [more]
FAAA_MOUSE1.658e-5053.65Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV... [more]
FAAA_HUMAN1.658e-5054.17Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV... [more]
FAAA_EMENI1.191e-4042.57Fumarylacetoacetase OS=Emericella nidulans GN=fahA... [more]
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Properties
Property NameValue
Genbank descriptionC32104H03EF RVDevelopN Citrus clementina cDNA clone C32104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921429 ID=FC921429; Name=FC921429; organism=Citrus clementina; type=EST; length=663bp
GCGAACTCCGAAGCTCACGCTCCACACTCGCTAACATTTACCGGAGCTCT
GAACGGCATCATTTTGTGACAGCCATGGCTTTGCAGTCTTTTATCGAAGT
TGAACCTGACTCTCATTTTCCTATCCAGAACCTCCCTTACGGAGTGTTCA
AACCTGAACCGGCCTCAATGGCTCGACCCGGAGTCGCAATCGGGGAATAC
GTTTTGGACCTCTCTGAAATTTCCAAAGCCGGTCTCTTCAACGGCCCGAT
CCTCAAGGACTCTGATTGCTTTCTCCAGCCTAATCTGAACAAGTTCTTGT
CTTTGGGGAGGCCTGCGTGGAAGGAAGCTCGTGATATGCTTCAAAAGTTA
TTGTCATCTAATGAAGCAACTTTACGTGACAATGCAAATTTAAGGCAGAA
ATCACTTGTCCCAATGGGTAAAGTAGAAATGCTTCTTCCTATGGAAATTG
GGGACTATACAGACTTCTTTTCATCCATGCATCATGCGAAGAACTGTGGG
ACCATATTTCGTGGACCAGCGAACCCAGTTCCAGCAAATTGGTTTCATCT
TCCCATTGCATATCATGGACGAGCATCATCTGTTGTCATCTCTGGAACAG
ACATTGTCCGGCCAAGAGGTCAATTTGCTCCATCTGGAAACTCTCCACCA
CCTTTTGGGCCTT
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