FC921478

Overview
NameFC921478
Unique NameFC921478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP_SOYBN (Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 558
            ++KGNE FK   Y +A   YT+AIK++P +   +SNRAA +  L  + + L DAE  I L+P + KGY RKG +  +M++YD AL  ++  L+++P + E+   I+R V Q+ K
Sbjct:  385 REKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINK 498          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_CRIGR (Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 606
            K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL+ +    E +   +R      ++  + E    R+  D
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 492          

HSP 2 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 567
            LK+KGN+   AGN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +     ++K
Sbjct:    7 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQNMEARLAERK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_MACFA (Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 606
            K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R      ++  + E    R+  D
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSRKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 492          

HSP 2 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 567
            LK+KGN+   AGN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +     ++K
Sbjct:    7 LKEKGNKALSAGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVELKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_HUMAN (Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 606
            K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R      ++  + E    R+  D
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 492          

HSP 2 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 567
            LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +     ++K
Sbjct:    7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_RAT (Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 606
            K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R      ++  + E    R+  D
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 492          

HSP 2 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 567
            LK+KGN+   AGN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +     ++K
Sbjct:    7 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQNMEARLAERK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_MOUSE (Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 606
            K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R      ++  + E    R+  D
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 492          

HSP 2 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 567
            LK+KGN+   AGN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +     ++K
Sbjct:    7 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQNMEARLAERK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_BOVIN (Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 540
            K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQR 470          

HSP 2 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 567
            LK+KGN+   AGN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +     ++K
Sbjct:    7 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQNMEARLAERK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STIP1_DICDI (Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---NPQSAEVSRK----IKRVSQLAKDKKRAQ------EVENIRSNVDMVQHLDEFKSEMSEKYGAEE 666
            K+KG E FK G + +A   + +AI+++P + T++SNR+AA+  L++   A+ DA+  I L P + KGY RKG  L AM +Y  AL  +   L+    NP+  ++SRK    + ++     D++R Q      E++ I S+  M Q L     +MSE   A +
Sbjct:  383 KNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLTDEERLQQAAKDPEIQKILSDPIMNQIL----KDMSENPAAAQ 540          

HSP 2 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 522
            K++GN  F + +Y  A   + QAI+ DPSN  L+SNR+A+ L L K   AL DA+  I L P W KGY R+   L  + ++++A  + +  L+ +P + ++
Sbjct:   12 KNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQL 112          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 585
            LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    ++LN  + K Y R+G    A+++ ++A   ++  L+  P + E + +++++SQ    K+ +   E
Sbjct:  136 LKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKE 258          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15
Identity = 39/119 (32.77%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 573
            LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    I+L+  + K Y R+G    A+++ +DA   ++  L+  P + E + ++++++Q    K+ +
Sbjct:  137 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENS 255          
The following BLAST results are available for this feature:
BLAST of FC921478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
STIP_SOYBN1.013e-1740.35Heat shock protein STI OS=Glycine max GN=STI PE=2 ... [more]
STIP1_CRIGR3.849e-1737.21Stress-induced-phosphoprotein 1 OS=Cricetulus gris... [more]
STIP1_MACFA6.565e-1737.21Stress-induced-phosphoprotein 1 OS=Macaca fascicul... [more]
STIP1_HUMAN6.565e-1737.21Stress-induced-phosphoprotein 1 OS=Homo sapiens GN... [more]
STIP1_RAT8.574e-1737.21Stress-induced-phosphoprotein 1 OS=Rattus norvegic... [more]
STIP1_MOUSE8.574e-1737.21Stress-induced-phosphoprotein 1 OS=Mus musculus GN... [more]
STIP1_BOVIN8.574e-1742.06Stress-induced-phosphoprotein 1 OS=Bos taurus GN=S... [more]
STIP1_DICDI2.495e-1633.95Protein STIP1 homolog OS=Dictyostelium discoideum ... [more]
RPAP3_HUMAN4.255e-1632.52RNA polymerase II-associated protein 3 OS=Homo sap... [more]
RPAP3_MOUSE1.238e-1532.77RNA polymerase II-associated protein 3 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC32105D09EF RVDevelopN Citrus clementina cDNA clone C32105D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921478 ID=FC921478; Name=FC921478; organism=Citrus clementina; type=EST; length=736bp
GAGATCAATTGAGCCCCGCCCCCTGACTCACAGGAACCCAAATTAGCACA
AGCATCAAACCTCGAAAAGAACCAAAAAGAAAAAAACAAGTTGTAAACGT
CTAACATAAACCCTAGCAACCGAAAAACCACAAAACACAGTGATAATTTC
TTCTTTTGTTGGAAAGATCATAGCTTTATAACTGAAAGTATGGCTGCTGA
AGCAGAGGAAATGTCATTGAAAGATAAAGGTAATGAATTTTTCAAAGCTG
GGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCAATCAAACAAGAC
CCTTCTAATCCAACTCTTTTCAGCAACCGTGCTGCAGCATTTCTACATCT
AGTCAAGCTTAACAAAGCACTTGCTGATGCGGAGACAACAATCTCATTGA
ACCCCCAGTGGGAAAAGGGATATTTTCGGAAAGGATGCATATTGGAGGCC
ATGGAACAATATGATGATGCCTTAAGTGCCTTCCAGACAGCTTTGCAATA
TAATCCACAGAGTGCAGAAGTATCGAGAAAAATAAAGAGGGTTTCCCAGT
TGGCAAAAGACAAAAAGCGAGCTCAAGAAGTTGAGAACATAAGATCCAAT
GTCGATATGGTGCAGCATTTGGATGAGTTCAAATCTGAAATGTCTGAGAA
GTATGGAGCTGAAGAATGTTGGAAGCACGTCTTTTCATTTGTTGTTGAGA
CAATGGAGACAGCTGTGAAGTCGTGGCATGAAACTT
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