FC921482

Overview
NameFC921482
Unique NameFC921482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14278 contig Ccv1_Contig14278:140..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921482 vs. ExPASy Swiss-Prot
Match: ARGE_DICDI (Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.304e-61
Identity = 122/235 (51.91%), Postives = 152/235 (64.68%), Query Frame = 1 
Query:    1 GESRYVQNNPPELIPQEDRVVKHVLDALLPLSTKTGGGPLVINHV----TYFTGRGNIIVEYPGTEPG----KILSFVGMHMDVVTANPNEWEFDPFSLNIDGEKLRGRGTTDCLGHVALVTELMRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYQDFPP 681
            GE+  +QN PP LIP ED   +HV++AL P   K  GG L +  V      +  RGNII+EYPGT  G    K +SFVG H+DVV A+   W+ +PF L I+G+KL GRGTTDCLGHVAL+T+L  +L   K  LK ++ AVFI SEEN  I G+GVDAL   G +N  K GP+YW+D+AD QP IGTGG   W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF P
Sbjct:   24 GETENLQNRPPALIPIEDNAGRHVIEALTPY-LKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADKTAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTIGTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKP 257
The following BLAST results are available for this feature:
BLAST of FC921482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARGE_DICDI1.304e-6151.91Acetylornithine deacetylase OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionC32105E01EF RVDevelopN Citrus clementina cDNA clone C32105E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921482 ID=FC921482; Name=FC921482; organism=Citrus clementina; type=EST; length=681bp
GGAGAGTCCAGATATGTGCAAAATAACCCACCTGAGTTGATCCCTCAGGA
GGATAGGGTGGTCAAGCATGTATTGGATGCTCTCCTTCCCTTGAGCACCA
AAACTGGAGGAGGACCTTTGGTTATTAATCATGTCACATACTTTACGGGC
AGAGGAAATATTATTGTGGAGTATCCTGGAACTGAGCCTGGAAAGATCTT
GTCATTTGTTGGCATGCATATGGATGTTGTCACCGCTAATCCTAATGAAT
GGGAATTTGATCCTTTTTCATTGAACATTGACGGGGAAAAACTTCGTGGC
CGTGGCACAACTGATTGTTTGGGACATGTTGCCCTTGTGACTGAACTAAT
GAGGAAGTTGGGGGAGACAAAACTCAAATTGAAGTCAACTGTGATTGCGG
TCTTCATAGCTAGTGAAGAGAACTCTGCCATAACAGGGGTTGGCGTGGAT
GCACTTGTGAAAGATGGGCTACTTAATAAGCTGAAGGGAGGTCCTCTTTA
CTGGATTGACACAGCAGATAAACAACCTTGCATTGGTACTGGTGGTATGA
TACCTTGGAAACTTCATGTGACTGGAAAGCTTTTTCACAGTGGTTTACCT
CATAAGGCAATAAATCCTTTGGAGCTAGCCATGGAAGCACTTAAAGTAAT
CCAGACACGGTTTTACCAAGACTTTCCACCT
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