FC921484

Overview
NameFC921484
Unique NameFC921484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921484_ssr249 microsatellite FC921484_ssr249:249..260. BLAST: Citrus ESTs to Prunus persica proteins V1
FC921484_ssr129 microsatellite FC921484_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13337 contig Ccv1_Contig13337:360..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.953e-67
Identity = 130/164 (79.27%), Postives = 140/164 (85.37%), Query Frame = 3
Query:  183 PTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELISPPRSL 674
            PT SHLGF N ++QL  F+  +          R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPP+GGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN+FDLMYEQVKA+K+G +VEKPIYNHVTGLLD PELI PP+ L
Sbjct:    9 PTTSHLGF-NQKKQL--FFCNKSAYKRVSFSSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPELIKPPKIL 168          
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.110e-61
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = 3
Query:  168 CSLYS-PTKSHLGFFNNQRQLAVFYN--KRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELISPPRSL 674
            C++Y+ PT +HLG   NQ    VF+N  +           R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDD+HSLDR GRK + VTALDP+AN+FDLMYEQVKA+K+G +V+KPIYNHV+GLLDPPELI PP+ L
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPKIL 173          
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.659e-60
Identity = 119/172 (69.19%), Postives = 133/172 (77.33%), Query Frame = 3
Query:  153 SLNSPCSLYSPTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELISPPR 668
            SL SPC+    T  + GF  NQ    +F+  R               ++C+    Q IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP+AN+FDLMYEQVKA+K+G ++EKPIYNHVTGLLDP ELI PP+
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNTRHGARTFQVSCAV--EQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQPPK 173          
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 109/128 (85.16%), Postives = 120/128 (93.75%), Query Frame = 3
Query:  291 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELISPPRSL 674
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGGAA+PPKGGNPDSNTLISDTTTVICLDDYHSLDR GRKE+ VTALDPRAN+FDLMYEQVKA+K+G++VEKPIYNHVTGLLDPPELI PP+ L
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKIL 167          
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.537e-50
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 3
Query:  306 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELISPP 665
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP GGNPDSNTLISD TTVICLDDYH LDR GRK KGVTAL P A NFDLMY QVKA+K+G SV+KPIYNHV+GL+D PE I  P
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESP 150          

HSP 2 Score: 28.4906 bits (62), Expect = 1.537e-50
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  644 PRAHQPPKILVIEXLHPMYD 703
            P   + P ILVIE LHP YD
Sbjct:  144 PEKIESPPILVIEGLHPFYD 163          
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.045e-38
Identity = 71/115 (61.74%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  318 QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELISP 662
            + ++IG+A DSGCGKSTF+RRLT +FG                  +  TVICLDDYHSLDR GRK  GVTALDPRANNFDLMYEQ+K +K G S+ KPIYNH TGLLDPPE + P
Sbjct:    7 RVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLDDYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVEP 104          

HSP 2 Score: 33.4982 bits (75), Expect = 4.045e-38
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  635 LGPPRAHQPPKILVIEXLHPMYD 703
            L PP   +P K++VIE LHP+YD
Sbjct:   96 LDPPEKVEPNKVVVIEGLHPLYD 118          
BLAST of FC921484 vs. ExPASy Swiss-Prot
Match: KPPR_VITSX (Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 3
Query:  381 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVK 578
            LTSVFGGAAEPP+GGNPDSNTLISDTTTVICLDDYHSLDR      GVTALDPRAN+FDLMYEQVK
Sbjct:    1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDLMYEQVK 60          
The following BLAST results are available for this feature:
BLAST of FC921484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
KPPR_MESCR4.953e-6779.27Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL3.110e-6170.35Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_WHEAT7.659e-6069.19Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH4.203e-5885.16Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_CHLRE1.537e-5075.83Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY34.045e-3861.74Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
KPPR_VITSX9.450e-2687.88Phosphoribulokinase, chloroplastic (Fragments) OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32105E03EF RVDevelopN Citrus clementina cDNA clone C32105E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921484 ID=FC921484; Name=FC921484; organism=Citrus clementina; type=EST; length=707bp
GAATCTAAATAAGATTCCAAAAGGTATCCCATCTCATCATTTTCATGTCT
CATTTCAGAATTTAGCTGAAAGAATCCTAAAACGTTCATTTCTGCTCTAG
CAGCAGCATCCCTCACCGAGCCAAAAAAAAAGAAAGAAAGAAAATGGCCA
TTTCCCTCAACTCACCATGCTCTCTTTACTCGCCAACAAAATCCCACTTG
GGTTTTTTCAACAACCAAAGACAGCTAGCGGTTTTTTACAACAAGAGAAG
CAGCAGCAGCAGTATCAGCAGCAAGCAGAGAGGATGTCTTGTGATAACAT
GCTCAGCAGGTGACTCACAGACAATTGTGATTGGTCTGGCGGCAGACTCG
GGGTGTGGCAAGAGCACTTTCATGAGGAGACTTACTAGCGTCTTTGGTGG
AGCAGCGGAGCCACCAAAGGGCGGCAACCCTGACTCAAACACTCTCATCA
GCGACACCACCACTGTGATTTGCTTGGATGATTATCACTCGCTTGACAGA
ACTGGAAGAAAAGAAAAGGGTGTCACTGCACTTGATCCTAGAGCCAACAA
TTTTGATCTTATGTATGAACAGGTTAAGGCTATGAAAGATGGAGTGTCTG
TTGAAAAGCCCATTTACAATCATGTCACCGGTCTCTTGGACCCCCCCGAG
CTCATCAGCCCCCCAAGATCCTTGTCATTGAANGCTTGCACCCAATGTAT
GATGCTC
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