FC921486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 1.170e-65 Identity = 127/173 (73.41%), Postives = 143/173 (82.66%), Query Frame = 1 Query: 175 MAETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 M+ T A+ TDLP+KRPR EA +NNG ME ++ K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSI NPKKVLVI VLREV+RHSSVE+IDICEIDKMVVDV+K + Sbjct: 1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQY 167
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.095e-63 Identity = 125/164 (76.22%), Postives = 138/164 (84.15%), Query Frame = 1 Query: 202 TDLPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 T+LP+KRPR++ E E ANN+NNG + + ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREVSRHSSVE+IDICEIDKMVV+V+K F Sbjct: 12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQF 170
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62 Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1 Query: 196 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +ATDL KRPR++ ++N G+ ME D K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDYQ+V VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREV+RH+S+E+ID+CEIDKMVVDVSK F Sbjct: 7 SATDL--KRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQF 163
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.065e-62 Identity = 123/161 (76.40%), Postives = 134/161 (83.23%), Query Frame = 1 Query: 199 ATDLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +TD PLKR R+D E N ++ + QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V VFQS+TYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREV+RHSSVEKIDICEIDKMVVDVSK + Sbjct: 10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEY 162
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.339e-61 Identity = 116/144 (80.56%), Postives = 127/144 (88.19%), Query Frame = 1 Query: 250 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 NNNNNG ++K+ CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQ+V VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREVSRHSSVE+IDICEIDKMVV+V+K F Sbjct: 7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQF 145
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 5.087e-61 Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 1 Query: 277 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 ME +NK+ ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREVSRHSSVE+IDICEIDKMV+DVSK F Sbjct: 1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQF 135
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.933e-60 Identity = 113/135 (83.70%), Postives = 120/135 (88.89%), Query Frame = 1 Query: 277 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 ME N + ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREVSRHSSVE+IDICEIDKMV+DVSK F Sbjct: 1 MEEQGNNESAYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQF 135
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 2.525e-60 Identity = 118/145 (81.38%), Postives = 126/145 (86.90%), Query Frame = 1 Query: 247 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 AN+NNNG +N+ P ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPLCSIPNPKKVLVI VLREVSRHSSVE+IDICEIDKMVV+VSK F Sbjct: 4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVSKQF 141
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 7.346e-60 Identity = 119/167 (71.26%), Postives = 136/167 (81.44%), Query Frame = 1 Query: 190 SAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 S + +K RDD EK +N + +V M+++ +K P + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+YQ V VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREV+RHSS+EKIDICEID MVV+VSK F Sbjct: 5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQF 170
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 7.346e-60 Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = 1 Query: 244 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 E N +NG ++ K+ ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI VLREVSRHSSVE+IDICEIDKMVV+V+K F Sbjct: 2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKEF 143 The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 196
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bpback to top |