FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14320 contig Ccv1_Contig14320:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.170e-65
Identity = 127/173 (73.41%), Postives = 143/173 (82.66%), Query Frame = 1
Query:  175 MAETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            M+ T  A+ TDLP+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSI NPKKVLVI      VLREV+RHSSVE+IDICEIDKMVVDV+K +
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQY 167          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.095e-63
Identity = 125/164 (76.22%), Postives = 138/164 (84.15%), Query Frame = 1
Query:  202 TDLPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            T+LP+KRPR++  E E   ANN+NNG      +  +    ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREVSRHSSVE+IDICEIDKMVV+V+K F
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQF 170          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62
Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1
Query:  196 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +ATDL  KRPR++      ++N G+  ME    D  K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDYQ+V VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREV+RH+S+E+ID+CEIDKMVVDVSK F
Sbjct:    7 SATDL--KRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQF 163          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.065e-62
Identity = 123/161 (76.40%), Postives = 134/161 (83.23%), Query Frame = 1
Query:  199 ATDLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V VFQS+TYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREV+RHSSVEKIDICEIDKMVVDVSK +
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEY 162          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.339e-61
Identity = 116/144 (80.56%), Postives = 127/144 (88.19%), Query Frame = 1
Query:  250 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            NNNNNG       ++K+  CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQ+V VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREVSRHSSVE+IDICEIDKMVV+V+K F
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQF 145          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.087e-61
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 1
Query:  277 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            ME  +NK+   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREVSRHSSVE+IDICEIDKMV+DVSK F
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQF 135          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.933e-60
Identity = 113/135 (83.70%), Postives = 120/135 (88.89%), Query Frame = 1
Query:  277 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            ME   N +   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREVSRHSSVE+IDICEIDKMV+DVSK F
Sbjct:    1 MEEQGNNESAYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQF 135          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.525e-60
Identity = 118/145 (81.38%), Postives = 126/145 (86.90%), Query Frame = 1
Query:  247 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            AN+NNNG       +N+ P  ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPLCSIPNPKKVLVI      VLREVSRHSSVE+IDICEIDKMVV+VSK F
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVSKQF 141          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.346e-60
Identity = 119/167 (71.26%), Postives = 136/167 (81.44%), Query Frame = 1
Query:  190 SAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+YQ V VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREV+RHSS+EKIDICEID MVV+VSK F
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQF 170          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.346e-60
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = 1
Query:  244 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            E  N +NG      ++ K+   ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVI      VLREVSRHSSVE+IDICEIDKMVV+V+K F
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKEF 143          
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPD2_ARATH1.170e-6573.41Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC1.095e-6376.22Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_ARATH1.581e-6272.73Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPD1_PEA2.065e-6276.40Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD2_DATST1.339e-6180.56Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD1_DATST5.087e-6185.19Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPD2_HYONI1.933e-6083.70Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=... [more]
SPDE_NICSY2.525e-6081.38Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD2_PEA7.346e-6071.26Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD1_HYONI7.346e-6078.77Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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