FC921498

Overview
NameFC921498
Unique NameFC921498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13703 contig Ccv1_Contig13703:74..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.083e-71
Identity = 140/208 (67.31%), Postives = 152/208 (73.08%), Query Frame = 1
Query:   70 MVGT-NSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTSS-GAPMDDPDVWXXXXXXXXXXXXXXAGQVGMRISPQDGAWARGATNRTGTSSRGGKAAGPSRGNTGVRAXXXXXXXXXXXXXXXADSANGDSEDG 687
            MVG+ NSL GLQDHLKLAREYALEG YDTS+IFFDGAIAQINKHLNTLDDPL R KWMNVKKA++EET+VVKQLDAERRAFKE P  RR +SPPIN KSSFVFQPLDEYPTSS G PMDDPDVW              AGQ G R SPQDGAWARG T RTG +SRGG+    S+   G R+               A+S NGD+EDG
Sbjct:    1 MVGSSNSLAGLQDHLKLAREYALEGSYDTSVIFFDGAIAQINKHLNTLDDPLARTKWMNVKKAIMEETEVVKQLDAERRAFKEAPTGRRAASPPINTKSSFVFQPLDEYPTSSGGGPMDDPDVWRPPTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARS-STAGKKGAASKSNKAESMNGDAEDG 207          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVW 435
            +L  + D+ K  REYAL G YD+S++++ G I QI++H  ++ DP ++ KW  V++ LLEE + VK + +   +FK          PP             ++P S    P  DP VW
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIHRHCQSVRDPAVKGKWQQVRQELLEEYEQVKSIVSTLESFK-------IDKPP-------------DFPVSYQDEPFRDPAVW 99          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 51/168 (30.36%), Postives = 74/168 (44.05%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVWXXXXXXXXXXXXXXAGQVGMRISP---QDGAWARGATNRTGTSSRGGKAA 576
            +L  + ++ K  REYAL G YD+S++++ G I QI +H  +L DP  +AKW  V++ LLEE + VK + +   +FK          PP             ++P S    P  DP VW                +    + P     GA ARG   R    S+  KAA
Sbjct:    2 NLAEICENAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSLRDPATKAKWQQVRQELLEEYEQVKSIVSTLESFK-------MDKPP-------------DFPVSCRDEPFRDPAVWPPPVPAEHRAPPQIR-RPNREVRPLRKDMGAGARGLVGRAHQISKSDKAA 148          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 39/118 (33.05%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVW 435
            +L  + D+ K  REYAL G YD+S++++ G I QI +H  ++ DP ++ KW  V++ LLEE + VK + +   +FK          PP             ++P S    P  DP VW
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSIRDPAVKGKWQQVRQELLEEYEQVKSIVSTLESFK-------IEKPP-------------DFPVSCQDEPFRDPAVW 99          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVW 435
            +L  + D+ K  REYAL G YD+S++++ G I QI +H  ++ DP ++ KW  V++ LLEE + VK + +   +FK          PP             ++P S    P+ DP VW
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSVRDPAVKGKWQQVRQELLEEYEQVKSIVSTLESFK-------IDKPP-------------DFPVSCQDEPVRDPAVW 99          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVW 435
            +L  + D+ K  REYAL G YD+S++++ G I QI +H  ++ DP I+ KW  V++ LLEE + VK + +   +FK          PP             ++P S    P  DP VW
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIVSTLESFK-------IDRPP-------------DFPVSCQDEPFRDPAVW 99          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVW 435
            +L  + ++ K  REYAL G YD+S++++ G I QI +H  +L DP  +AKW  V++ LLEE + VK + +   +FK          PP             ++P S    P  DP VW
Sbjct:    2 NLAEICENAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSLRDPATKAKWQQVRQELLEEYEQVKSIVSTLESFK-------MDKPP-------------DFPVSCRDEPFRDPAVW 99          
BLAST of FC921498 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 39/118 (33.05%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   85 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSRRTSSPPINAKSSFVFQPLDEYPTS-SGAPMDDPDVW 435
            +L  + D+ K  REYAL G YD+S++++ G + QI +H  ++ DP I+ KW  V++ LLEE + VK + +   +FK          PP             ++P S    P  DP VW
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIVSTLESFK-------IDKPP-------------DFPVSCQDEPFRDPAVW 99          
The following BLAST results are available for this feature:
BLAST of FC921498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
KTNA1_ARATH1.083e-7167.31Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KATL1_SORAR1.645e-1133.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RAT1.645e-1130.36Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT1.645e-1133.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA1.645e-1133.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN2.149e-1133.90Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_MOUSE3.665e-1133.90Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN3.665e-1133.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32105F08EF RVDevelopN Citrus clementina cDNA clone C32105F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921498 ID=FC921498; Name=FC921498; organism=Citrus clementina; type=EST; length=688bp
GACAGCTTCCCAAATCAGGTGATTTTAAATCAGATGAAACCCTAGAATTT
TGGGCGTAATTTTAACAAGATGGTAGGGACAAATTCGCTAGTGGGATTGC
AAGATCACTTGAAGCTTGCCAGAGAGTACGCGCTAGAAGGACTTTACGAC
ACCTCGATCATCTTCTTCGACGGTGCCATTGCTCAGATCAACAAGCACCT
AAATACGCTTGATGATCCGTTAATACGTGCAAAATGGATGAATGTCAAGA
AAGCTCTGTTGGAGGAAACAGATGTTGTGAAGCAATTGGATGCTGAGAGA
AGAGCATTTAAGGAAGTTCCAGGAAGCAGGCGTACTTCTTCACCACCAAT
TAATGCTAAATCTTCATTTGTTTTTCAGCCGTTGGATGAGTATCCAACTT
CCTCAGGTGCTCCAATGGATGATCCTGATGTGTGGAGGCCACCAAGTCGG
GACACTTCGAGCAGGAGACCCGCGAGGGCTGGTCAAGTTGGTATGAGAAT
ATCACCTCAAGATGGGGCTTGGGCTCGTGGTGCTACTAACAGGACTGGTA
CATCTAGCCGTGGTGGAAAGGCTGCTGGTCCCAGCAGGGGTAACACTGGT
GTTCGAGCATCAACTACTGGCAAAAAAGGCACTGGTTCTGGAAAATCTGG
CAAGGCAGATTCTGCTAATGGTGACAGTGAAGATGGGA
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