FC921500

Overview
NameFC921500
Unique NameFC921500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14311 contig Ccv1_Contig14311:2..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921500 vs. ExPASy Swiss-Prot
Match: CL049_MOUSE (UPF0454 protein C12orf49 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  136 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNPAR-TLKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHGNAY 462
            C+ +VQG++LL+D+ GYVC+   +     CC       +++ C GC L + CC +YEYCVSCC+ P++  L E+ LN   +A           F+ C  +CR +S+SV H N Y
Sbjct:   75 CRNSVQGKHLLTDELGYVCERKDLLANG-CCDVSVPSTKQYCCDGC-LANGCCEAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186          
BLAST of FC921500 vs. ExPASy Swiss-Prot
Match: CL049_BOVIN (UPF0454 protein C12orf49 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  136 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCPEK---GEKFSCQGCNLLSQCCNSYEYCVSCCVNP-ARTLKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHGNAY 462
            C+ ++QG++L++D+ GYVC+   +     CC       +++ C GC L S CC++YEYCVSCC+ P  + L E+ LN   +A           F+ C  +CR +S+SV H N Y
Sbjct:   75 CRNSIQGKHLITDELGYVCERRDLLVNG-CCNVNVPGTKQYCCDGC-LSSGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186          
BLAST of FC921500 vs. ExPASy Swiss-Prot
Match: CL049_XENLA (UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   91 NISHQERFGFQETPFCKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNPARTLK-EQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHGNAYLSDF-HHCF 486
            N+ +  R   Q    C+ +VQG+ L++DD GY+C+   +     CC       + +SC+ C L + CC+ YE+CVSCC+ P + L+ E+ LN   +A           F+ C  +CR +S+SV H N Y +    HC+
Sbjct:   64 NLGNSSRISNQ----CRNSVQGKLLVTDDMGYICERKELLANG-CCNINVASTKLYSCETC-LPNGCCSVYEFCVSCCLQPNKQLQLERFLNKAAVAFQNLFQAVEDHFELCLAKCRTSSQSVQHENTYRNPIAKHCY 195          
BLAST of FC921500 vs. ExPASy Swiss-Prot
Match: CL049_HUMAN (UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf49 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  136 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNP-ARTLKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHGNAY 462
            C+ ++QG++L++D+ GYVC+   +     CC       +++ C GC   + CC++YEYCVSCC+ P  + L E+ LN   +A           F+ C  +CR +S+SV H N Y
Sbjct:   75 CRNSIQGKHLITDELGYVCERKDLLVNG-CCNVNVPSTKQYCCDGC-WPNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186          
BLAST of FC921500 vs. ExPASy Swiss-Prot
Match: CL049_CHICK (UPF0454 protein C12orf49 homolog OS=Gallus gallus GN=RCJMB04_18o22 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  136 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHGNAY 462
            C+ +VQG+ L++D+ GY+C+   +     CC       + +SC  C L + CC+ YEYCVSCC+ P++  L E+ LN   +A           F+ C  +CR +S+SV H N Y
Sbjct:   75 CRNSVQGKLLITDELGYICERKDLLVNG-CCNVNVPSTKLYSCDSC-LPNGCCSVYEYCVSCCLQPSKQHLLERFLNRAAMAFQNLFMAVEDRFELCLAKCRTSSQSVQHENTY 186          
BLAST of FC921500 vs. ExPASy Swiss-Prot
Match: CL049_DANRE (UPF0454 protein C12orf49 homolog OS=Danio rerio GN=zgc:110063 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  136 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCC---PEKGEKFSCQGCNLLSQCCNSYEYCVSCCVNP-ARTLKEQVLNVKIAKPTTAGTYGSV---FDFCAGRCRHNSESVVHGNAY 462
            C+ ++QG+ LL+D+ GYVC+   +     CC        ++ C+ C L + CC+ YEYCVSCC+ P  + L E+ LN   A       + +V   F+ C  +CR +S+SV H N Y
Sbjct:   69 CRNSIQGKSLLTDELGYVCERKDLLVNG-CCNVNAPSSSQYVCKSC-LSNGCCSIYEYCVSCCLQPDKQPLLERFLN--RAAEGFQNLFTAVEDHFELCLAKCRTSSQSVQHENTY 180          
The following BLAST results are available for this feature:
BLAST of FC921500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CL049_MOUSE3.850e-1537.72UPF0454 protein C12orf49 homolog OS=Mus musculus P... [more]
CL049_BOVIN2.495e-1436.84UPF0454 protein C12orf49 homolog OS=Bos taurus PE=... [more]
CL049_XENLA3.259e-1433.33UPF0454 protein C12orf49 homolog OS=Xenopus laevis... [more]
CL049_HUMAN2.112e-1335.09UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf... [more]
CL049_CHICK4.706e-1335.96UPF0454 protein C12orf49 homolog OS=Gallus gallus ... [more]
CL049_DANRE1.788e-1236.21UPF0454 protein C12orf49 homolog OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionC32105F10EF RVDevelopN Citrus clementina cDNA clone C32105F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921500 ID=FC921500; Name=FC921500; organism=Citrus clementina; type=EST; length=764bp
GAAATCAAAATCCAAGACGAGAATGCCGAAATCTAGGTTAAATTTATTAT
TTTTATTCTTTCAATTACTCACCCTCCAGTTTCTATCAATAATATCAGCC
ATCAGGAAAGATTTGGCTTTCAAGAAACACCTTTCTGTAAAACTACAGTC
CAAGGAAGATATTTATTATCCGATGATAACGGATATGTATGTGATGCTGT
GTCAATGGATCCACAATCCCGATGCTGCCCAGAGAAAGGAGAGAAATTCT
CTTGTCAGGGATGCAATCTTCTTTCACAGTGCTGCAACTCATATGAATAT
TGCGTTTCATGCTGTGTTAATCCTGCAAGAACTCTAAAAGAACAAGTACT
GAACGTGAAGATTGCGAAGCCAACAACTGCAGGAACATATGGAAGTGTTT
TTGATTTCTGTGCTGGGAGGTGTCGTCATAATTCTGAGAGCGTGGTTCAT
GGAAATGCTTATCTTAGTGATTTTCATCATTGCTTTTCAATGCCATCAAA
TGCTTCAGGGGCTGGCGTTACTCAGCTGGAAGGCAGACTGTCTGGAATTA
GTGTTATTATTGGAAGGCTAGGCGAGTCTTGTGATTCAGTCTGTAAGTCA
AGTGGACAATCATGTGTACTAAATAAGCTTATTCTGCTTAAATCATGTGA
GATTATTCAAAGTATATGAGCTGTAAAGAGGATGTCTGGCAGCATGGGAG
CAATCAACTGCTGAAGTGCTGATGAGCTCCAGCATTTGATCCACACATGC
TGTCACCGATACAT
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