FC921504

Overview
NameFC921504
Unique NameFC921504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: WDTC1_MOUSE (WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.297e-22
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  374 ETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHLFDCVVATSGIDSTIR 628
            E   D + RY GHCN  TDIK+A+F G    YI SGSDDG +FIWEK+T  L+++L GDE++VNC+Q H   C +ATSGID  +R
Sbjct:  521 ERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVR 605          
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: WDTC1_HUMAN (WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.297e-22
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  374 ETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHLFDCVVATSGIDSTIR 628
            E   D + RY GHCN  TDIK+A+F G    YI SGSDDG +FIWEK+T  L+++L GDE++VNC+Q H   C +ATSGID  +R
Sbjct:  521 ERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVR 605          
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: YBU3_SCHPO (Uncharacterized WD repeat-containing protein C609.03 OS=Schizosaccharomyces pombe GN=SPBC609.03 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  401 YVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHLFDCVVATSGIDSTIR 628
            Y GHCNV + IK  +F GQ  +Y+ SGSDDGR+FIW+K    ++ ++ GD   VN ++ H     +A SGIDST++
Sbjct:  664 YYGHCNVES-IKNVNFYGQNDEYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVK 738          
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: DCAF6_PONAB (DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  389 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHLFDCVVATSGIDSTIR 628
            +K  Y GH N  T IK+A+F G   +++ SGSD G  FIW++ T   + +L  D  VVNC+Q H FD ++A+SGID  I+
Sbjct:  709 VKMVYKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIK 786          
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: DCAF6_MOUSE (DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  389 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHLFDCVVATSGIDSTIR 628
            +K  Y GH N  T IK+A+F G   +++ SGSD G  FIW++ T   + +L  D  VVNC+Q H FD ++A+SGID  I+
Sbjct:  725 VKMVYKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIK 802          
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: DCAF6_HUMAN (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  389 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHLFDCVVATSGIDSTIR 628
            +K  Y GH N  T IK+A+F G   +++ SGSD G  FIW++ T   + +L  D  VVNC+Q H FD ++A+SGID  I+
Sbjct:  709 VKMVYKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIK 786          
BLAST of FC921504 vs. ExPASy Swiss-Prot
Match: DC8L1_HUMAN (DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  395 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEA-VVNCVQCHLFDCVVATSGIDSTIR 628
            +RY GH N  T IK  +F G R +++ SGSD G  F WEK + ++I+ + GD   +VNC++ H +  V+ATSG+D  +R
Sbjct:  429 KRYKGHRNNDT-IKCVNFYGPRSEFVVSGSDCGHVFFWEKSSSQIIQFMEGDRGDIVNCLEPHPYLPVLATSGLDQHVR 506          
The following BLAST results are available for this feature:
BLAST of FC921504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
WDTC1_MOUSE4.297e-2255.29WD and tetratricopeptide repeats protein 1 OS=Mus ... [more]
WDTC1_HUMAN4.297e-2255.29WD and tetratricopeptide repeats protein 1 OS=Homo... [more]
YBU3_SCHPO2.137e-1346.05Uncharacterized WD repeat-containing protein C609.... [more]
DCAF6_PONAB1.532e-1145.00DDB1- and CUL4-associated factor 6 OS=Pongo abelii... [more]
DCAF6_MOUSE1.532e-1145.00DDB1- and CUL4-associated factor 6 OS=Mus musculus... [more]
DCAF6_HUMAN1.532e-1145.00DDB1- and CUL4-associated factor 6 OS=Homo sapiens... [more]
DC8L1_HUMAN7.602e-1143.04DDB1- and CUL4-associated factor 8-like protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionC32105G02EF RVDevelopN Citrus clementina cDNA clone C32105G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921504 ID=FC921504; Name=FC921504; organism=Citrus clementina; type=EST; length=665bp
AAATATAAAGAAGCATATTGCTGCAGAGAAAAATAATAAGGCAAATGATG
GAGGAGCAAGGTCCGAACCTCGAACTGGAAGAGTACTTTCACTGAGTGAT
ATAATCTACCGGTCAGAGGCTAATAGCGATGCTTCACAAGATGGTCCAAG
ATCTGAAAGGGAAGATTCTGACTATGATGAGGAGGTGGAGGTGGATTTTC
GTACATCTGTACCAGGTGATGAAGGGCGTGACGTAGAAGCCAATTTTCTG
CATGGAAGTTTGAATGTGAGAATCCACCGAAGAGGTGATTCAGCTAGAGA
AACTGTCGATGCAAATGGTTCCTCTGGATCGCCTTCGTCTTCCTCACAAA
ATGATAGGATTCCTTATCAGCCTGAGACAGTTATTGACATGAAGCAAAGA
TACGTTGGCCATTGTAATGTTGGAACTGACATTAAGCAAGCTAGTTTTCT
TGGTCAAAGAGGTGATTATATAGCTAGTGGGAGTGATGATGGTAGATGGT
TTATTTGGGAAAAGCAAACAGGTAGACTGATTAAAATGCTCCTTGGAGAT
GAAGCTGTTGTGAACTGCGTGCAGTGTCATCTCTTTGATTGTGTGGTGGC
AACCAGTGGCATTGATAGCACAATAAGATATGGACTCCAAGTGCTTCTGT
TCCCATCATTGTTTC
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