FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14347 contig Ccv1_Contig14347:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.805e-63
Identity = 119/156 (76.28%), Postives = 141/156 (90.38%), Query Frame = 3
Query:  177 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI N+QN NRNMLGESL+ L+ ++LKN+E ++EKGIS+
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISK 153          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.275e-63
Identity = 118/156 (75.64%), Postives = 140/156 (89.74%), Query Frame = 3
Query:  177 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI N+QN NRN LGESL+ LN ++L+N+E ++EKGIS+
Sbjct:    1 MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISK 153          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.070e-62
Identity = 116/156 (74.36%), Postives = 140/156 (89.74%), Query Frame = 3
Query:  177 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L+VFS+RGRLYEY+NNSVK+TI+RYKKA +D+SNTGS+ EANAQ+YQQEA+KLR QI N+ N NRNM+GE+L+G+  KELKN+E R+EKGIS+
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISK 153          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.447e-59
Identity = 112/143 (78.32%), Postives = 130/143 (90.91%), Query Frame = 3
Query:  216 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            LSP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NNSVK TI+RYKKA  D+ NT S+ EANAQFYQQEA+KLR +IS++Q +NRNM+GESL  L  ++LK +ET+LEKGISR
Sbjct:   11 LSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISR 153          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.563e-58
Identity = 113/156 (72.44%), Postives = 134/156 (85.90%), Query Frame = 3
Query:  177 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MA+ +EL     + SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RLE+ I+R
Sbjct:    1 MAYQSELGG---DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITR 153          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.654e-58
Identity = 112/156 (71.79%), Postives = 134/156 (85.90%), Query Frame = 3
Query:  177 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MA+  EL     E SP+RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RL++ ++R
Sbjct:    1 MAYQMELGG---ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNR 153          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.310e-57
Identity = 110/151 (72.85%), Postives = 129/151 (85.43%), Query Frame = 3
Query:  192 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            E  A  E     +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  +I EAN Q+YQQEA+KLR QI ++QN NR++LGESL  LNFKELKN+E+RLEKGISR
Sbjct:    2 EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISR 152          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.940e-57
Identity = 108/151 (71.52%), Postives = 128/151 (84.77%), Query Frame = 3
Query:  192 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            E      +    +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  S+ EAN Q+YQQEA+KLR QI ++QNSNR+++GESL  LNFKELKN+E RLEKGISR
Sbjct:    2 EEGGSSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISR 152          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.401e-54
Identity = 103/137 (75.18%), Postives = 124/137 (90.51%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NN+++STI+RYKKA +D++NT ++ E NA +YQQE+AKLR QI  +QNSNRN++G+SLS L+ KELK +E RLEK ISR
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.324e-54
Identity = 102/138 (73.91%), Postives = 127/138 (92.03%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSN-RNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVKST++RYKKA +DTSN+G++ E NAQ YQQE++KLR QIS++QN+N R ++G+S++ ++ ++LK +E RLEKGI++
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAK 138          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AG_TOBAC4.805e-6376.28Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY6.275e-6375.64Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_SOLLC1.070e-6274.36Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PANGI1.447e-5978.32Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_ARATH3.563e-5872.44Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_BRANA4.654e-5871.79Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL5_ARATH2.310e-5772.85Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH3.940e-5771.52Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL11_ARATH1.401e-5475.18Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MADS3_ORYSJ5.324e-5473.91MADS-box transcription factor 3 OS=Oryza sativa su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
back to top