FC921591

Overview
NameFC921591
Unique NameFC921591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15536 contig Ccv1_Contig15536:35..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_BACSU (GTP-binding protein typA/bipA homolog OS=Bacillus subtilis GN=typA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 82/180 (45.56%), Postives = 121/180 (67.22%), Query Frame = 1
Query:  109 KVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA-ETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDM 645
            +V K+   +G   V I+ A AGD++++ GM   ++G TV   +    LP + +D PT+ +TF VN+SP AGR+G ++T  KI  RL S+ +T++++ V P  + + + V GRGEL L ILIENMRREG+EL VS P+V+ K  +GV+ EP+E V I+V EEH G VME++  RK E++DM
Sbjct:  252 RVTKIFGFQGLKRVEIEEAKAGDLVAVSGMEDINVGETVCPVDHQDPLPVLRIDEPTLQMTFVVNNSPFAGREGKYVTARKIEERLQSQLQTDVSLRVEPTASPDAWVVSGRGELHLSILIENMRREGYELQVSKPEVIIKEIDGVRCEPVERVQIDVPEEHTGSVMESMGARKGEMVDM 431          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_SYNY3 (GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803) GN=typA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 83/184 (45.11%), Postives = 116/184 (63.04%), Query Frame = 1
Query:   97 IEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDM 645
            I +GKV KL+  +G   + +  A AG I++I G    +IG T+   +   ALP I++D PT+ +TF VNDSP AG++G  +T  +I  RL  E ETN+A+ V  G  AE + V GRGEL LGILIE MRREG+E  V+ P+V+Y+  NG   EP+E + ++V E  VG  +E L  R+ E+ DM
Sbjct:  246 IAKGKVSKLLGFEGLNRIELPEASAGYIVAIAGFADANIGETLTCPDEPQALPLIKVDEPTLQMTFSVNDSPFAGQEGKFVTSRQIRDRLNRELETNVALRVEDGESAEQFLVSGRGELHLGILIETMRREGYEFQVAQPQVIYREVNGQPCEPVEYLVLDVPEAAVGACIERLGQRRGEMQDM 429          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 81/194 (41.75%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  100 EEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            E G++ KL+   G     I++A AGDI++I G     +G +V +      L  + L+ PT+SV F VNDSPLAG +G H+T  K+  RL+ E +TN+A+         ++V GRGELQ+ IL EN+RREGFE S+S P+V+ K ENGVK EP E + I+  ++  G ++E L  RKAE+  M P+     R  +
Sbjct:  246 ENGRITKLIGFLGLARTEIENAYAGDIVAIAGFNAMDVGDSVVDPANPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEF 439          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 80/194 (41.24%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  100 EEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            E G++ KL+   G     I++A AGDI+++ G     +G +V +      L  + L+ PT+SV F VNDSPLAG +G H+T  K+  RL+ E +TN+A+         ++V GRGELQ+ IL EN+RREGFE S+S P+V+ K ENGVK EP E + I+  ++  G ++E L  RKAE+  M P+     R  +
Sbjct:  246 ENGRITKLIGFLGLARTEIENAYAGDIVALAGFNAMDVGDSVVDPTNPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEF 439          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_SHIFL (GTP-binding protein typA/bipA OS=Shigella flexneri GN=typA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 85/197 (43.15%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   94 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+S+ F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_HAEIN (GTP-binding protein typA/bipA homolog OS=Haemophilus influenzae GN=typA PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 87/195 (44.62%), Postives = 124/195 (63.59%), Query Frame = 1
Query:   94 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINV--IPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGR 672
            K  +G++ +++   G      D A AGDI++I G+ + +I  T+ +     ALP++ +D PT+++ F VN SP AG++G ++T  +I  RL  E   N+A+ V   P   E + V GRGEL L +LIENMRREG+EL+VS PKV+Y+  +G K EP E+VTI+V E+H G VMEAL  RK EV DM  +P   GR
Sbjct:  251 KTRQGRIGQVLGHLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINTVEALPSLTVDEPTVTMFFCVNTSPFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDE-FRVSGRGELHLSVLIENMRREGYELAVSRPKVIYRDIDGKKQEPYEQVTIDVEEQHQGSVMEALGIRKGEVRDM--LPDGKGR 442          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_ECOLI (GTP-binding protein typA/BipA OS=Escherichia coli (strain K12) GN=typA PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 85/197 (43.15%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   94 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+S+ F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_ECOL6 (GTP-binding protein typA/bipA OS=Escherichia coli O6 GN=typA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 85/197 (43.15%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   94 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+S+ F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_ECO57 (GTP-binding protein typA/bipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 85/197 (43.15%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   94 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+S+ F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
BLAST of FC921591 vs. ExPASy Swiss-Prot
Match: TYPA_ECO27 (GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 85/197 (43.15%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   94 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIVGMTKPSIGHTVANTEVTTALPTIELDPPTISVTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 681
            K    KV K++   G   +  D A AGDI++I G+ + +I  TV +T+   ALP + +D PT+S+ F VN SP  G++G  +T  +I  RL  E   N+A+ V     A+ + V GRGEL L +LIENMRREGFEL+VS PKV+++  +G K EP E VT++V E+H G VM+AL  RK ++ +M P      R +Y
Sbjct:  245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDY 441          
The following BLAST results are available for this feature:
BLAST of FC921591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TYPA_BACSU7.087e-3945.56GTP-binding protein typA/bipA homolog OS=Bacillus ... [more]
TYPA_SYNY32.977e-3745.11GTP-binding protein TypA/BipA homolog OS=Synechocy... [more]
TYPA_HELPY2.977e-3741.75GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
TYPA_HELPJ5.079e-3741.24GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
TYPA_SHIFL1.131e-3643.15GTP-binding protein typA/bipA OS=Shigella flexneri... [more]
TYPA_HAEIN1.131e-3644.62GTP-binding protein typA/bipA homolog OS=Haemophil... [more]
TYPA_ECOLI1.131e-3643.15GTP-binding protein typA/BipA OS=Escherichia coli ... [more]
TYPA_ECOL61.131e-3643.15GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO571.131e-3643.15GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO271.131e-3643.15GTP-binding protein typA/bipA OS=Escherichia coli ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32107B03EF RVDevelopN Citrus clementina cDNA clone C32107B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921591 ID=FC921591; Name=FC921591; organism=Citrus clementina; type=EST; length=688bp
CTTGGGCGAATATTAACCGGTCGTGTTTCTTCTGGTGTTGTTTCTGTTGG
TGACAAAGTACATGGACTACGAATCACTGATTCTGGGACTGAGAAGATTG
AAGAAGGAAAGGTTATAAAGCTAATGAAAAAGAAAGGTACAGGCATGGTT
CTAATTGATAGTGCTGGAGCGGGTGACATTATCTCAATAGTAGGCATGAC
AAAACCATCAATAGGCCATACAGTAGCAAATACAGAGGTTACAACTGCAT
TACCAACCATTGAGTTGGACCCCCCAACCATTTCCGTGACTTTTGGTGTC
AATGACTCTCCATTGGCTGGTCGTGATGGTACTCATTTGACTGGAGGAAA
GATTGGTGCTCGGCTAATGTCTGAAGCTGAAACAAACCTTGCAATAAATG
TAATTCCAGGCATGGCTGAAACTTATGAGGTTCAGGGGAGGGGAGAACTT
CAACTGGGTATATTAATCGAGAATATGAGGCGTGAAGGATTTGAGCTTTC
TGTATCACCACCTAAAGTTATGTATAAAACTGAGAATGGTGTAAAGCTCG
AGCCAATTGAAGAAGTGACTATCGAGGTTAACGAGGAACATGTGGGGTTG
GTTATGGAAGCTCTCTCTCACAGGAAAGCTGAGGTTATGGACATGGGTCC
TGTCCCTGGAAGTGCTGGCAGGACTAACTATCCTTAAC
back to top