FC921594

Overview
NameFC921594
Unique NameFC921594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:2..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.373e-90
Identity = 169/201 (84.08%), Postives = 178/201 (88.56%), Query Frame = 2
Query:   89 MATAMVEDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            MAT M ED N EDDQL +M+ +DI+RASRLLDNEIR++KEELQRTNLELDSF                LPYLVGNIVEILEMNPE+EAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDY+DIGGLEKQIQELVEAIVLPMTH+ERFQKLGV
Sbjct:    1 MATPMAEDSNFEDDQLHAMSTEDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGV 201          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.088e-87
Identity = 166/202 (82.18%), Postives = 177/202 (87.62%), Query Frame = 2
Query:   89 MATAMVEDPN-LEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            MAT MVED +  E+DQL+SM+ +DI RA+RLLDNEIR+LKE+ QRTNLE DS+                LPYLVGNIVEILEMNPED+AEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERF+KLGV
Sbjct:    1 MATPMVEDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.088e-87
Identity = 166/202 (82.18%), Postives = 178/202 (88.12%), Query Frame = 2
Query:   89 MATAMVEDPN-LEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            MAT MVED +  E+DQL+SM+ +DIVRA+RLL+NEIR+LKE+ QRTNLE DS+                LPYLVGNIVEILEMNPED+AEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERF+KLGV
Sbjct:    1 MATPMVEDTSSFEEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 320.857 bits (821), Expect = 4.133e-87
Identity = 165/201 (82.09%), Postives = 175/201 (87.06%), Query Frame = 2
Query:   89 MATAMVEDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            MATAM ED + E DQL+SMT DDI RASRLL NEIR+LKEE QRTNL+L+S                 LPYLVGNIVEILEM+PED+AEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE+F+KLG+
Sbjct:    1 MATAMAEDTSFEGDQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGI 201          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.570e-86
Identity = 163/200 (81.50%), Postives = 177/200 (88.50%), Query Frame = 2
Query:   92 ATAMVEDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            A AM  D + +DDQL+SM+ +DIVRA+RLLDNE RVLK+ELQRTNLE++S+                LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPV+GLVDP+KLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK+RFQKLG+
Sbjct:    9 AAAMAVD-DADDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGI 207          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.807e-65
Identity = 120/188 (63.83%), Postives = 152/188 (80.85%), Query Frame = 2
Query:  128 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +++  M+ ++IV+ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HKE+F+ LG+
Sbjct:   31 EEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGI 217          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 7.584e-65
Identity = 119/188 (63.30%), Postives = 152/188 (80.85%), Query Frame = 2
Query:  128 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +++  M+ ++I++ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HKE+F+ LG+
Sbjct:   31 EEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGI 217          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.584e-65
Identity = 119/188 (63.30%), Postives = 152/188 (80.85%), Query Frame = 2
Query:  128 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +++  M+ ++I++ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HKE+F+ LG+
Sbjct:   15 EEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGI 201          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.294e-64
Identity = 119/188 (63.30%), Postives = 152/188 (80.85%), Query Frame = 2
Query:  128 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +++  M+ ++IV+ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP++YDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HKE+F+ LG+
Sbjct:   34 EEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGI 220          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.689e-64
Identity = 119/183 (65.03%), Postives = 149/183 (81.42%), Query Frame = 2
Query:  143 MTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            M+ ++I++ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HKE+F+ LG+
Sbjct:    1 MSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGI 182          
The following BLAST results are available for this feature:
BLAST of FC921594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PRS6A_SOLLC1.373e-9084.0826S protease regulatory subunit 6A homolog OS=Sola... [more]
PS6AA_ARATH1.088e-8782.1826S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM1.088e-8782.1826S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AB_ARATH4.133e-8782.0926S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_ORYSJ1.570e-8681.5026S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_RAT5.807e-6563.8326S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN7.584e-6563.3026S protease regulatory subunit 6A OS=Homo sapiens... [more]
PR6AA_XENLA7.584e-6563.3026S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS6A_MOUSE1.294e-6463.3026S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA1.689e-6465.0326S protease regulatory subunit 6A-B OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionC32107B06EF RVDevelopN Citrus clementina cDNA clone C32107B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921594 ID=FC921594; Name=FC921594; organism=Citrus clementina; type=EST; length=692bp
GGAACAAGTTGGAGTTTTTAACTTTTGAGCCACACTCTTGTCTCTCTTTT
ATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCATATGGCGACGGCG
ATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGTCTTCCATGACGGC
CGATGATATTGTTCGGGCGTCGCGGCTACTCGACAACGAGATTCGTGTCC
TAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGATTCGTTCAAGGAG
AAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATAAGCAGCTTCCTTA
CTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAACCCAGAGGATGAGG
CTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCAAAGGAAGGGTAAA
TGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCTTTCTTCCAGTAGT
CGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGATCTGGTTGGAGTTA
ATAAGGATAGTTACTTGATCCTGGACACACTGCCTTCTGAGTATGATTCT
CGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTGAAGATTATAATGA
CATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTTGAGGCTATTGTGC
TGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGGGGTTC
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