FC921609

Overview
NameFC921609
Unique NameFC921609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921609_ssr534 microsatellite FC921609_ssr534:534..545. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: ACCC_ANASP (Biotin carboxylase OS=Anabaena sp. (strain PCC 7120) GN=accC PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.046e-74
Identity = 131/199 (65.83%), Postives = 160/199 (80.40%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERG 599
            FL+ENA F E+C +H I FIGP P++IR+MGDKSTA+ETM+ AGVPTVPGS+GL+++ +E ++LA ++G+PVMIKATAGGGGRGMRL + P EFVKL   A+ EA AAFGN GVY+EK+++ PRHIEFQ+LAD YGNV+H GERDCSIQRRNQKLLEEAPSPAL  +LR+ MG         I Y G GT+EFLLD  G
Sbjct:   85 FLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEGLVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGERDCSIQRRNQKLLEEAPSPALDSDLREKMGQAAVKAAQFINYTGAGTIEFLLDRSG 283          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: ACCC1_BACSU (Biotin carboxylase 1 OS=Bacillus subtilis GN=accC1 PE=3 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 4.404e-65
Identity = 116/196 (59.18%), Postives = 149/196 (76.02%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD 590
            FLAENA F E+C E  + F+GP+ D+I  MG K  ARETMK AGVP VPGS G++++ EEAV LA+E+G+PV+IKATAGGGG+G+R+A+   E +  ++  + EAA AFGN GVY+EKY+++ RH+E QVLAD YGN +H GERDCSIQRR QKLLEE+PSPAL  E+R+ MGD       ++GY G GTVEF+ D
Sbjct:   84 FLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARETMKQAGVPIVPGSQGIIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPSPALDSEIREQMGDAAVKAAKAVGYTGAGTVEFIYD 279          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: PYCA_METJA (Pyruvate carboxylase subunit A OS=Methanocaldococcus jannaschii GN=pycA PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.894e-58
Identity = 101/196 (51.53%), Postives = 145/196 (73.98%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD 590
            FLAENA F    ++ G  FIGPNPD+I  MG K  A++ MK AGVP +PGS+G ++  +EA+++A+ +GFPV++KA+AGGGG GM +A    E  ++++ A++ A +AFG+  V++EKY++NPRHIE Q+L DK+GN++H G+R+CSIQRR+QKL+EEAPSP +T ELR+ MG+       +I Y   GTVEFL +
Sbjct:   84 FLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKIMKKAGVPLIPGSEGAIEDIDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEVIESARNIAKSAFGDPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQKLIEEAPSPIMTEELRERMGEAAIKAGKAINYDSAGTVEFLYE 279          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: PYCA_METTH (Pyruvate carboxylase subunit A OS=Methanobacterium thermoautotrophicum GN=pycA PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.737e-56
Identity = 104/194 (53.61%), Postives = 137/194 (70.62%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFL 584
            FLAEN    E C + GI  IGP    I  MGDK T+++ MK AGVP +PG+D  +   +EA ++AD +G+PV+IKA+AGGGG GMR   E  E ++ ++  +S AA+AFG+  VY+EKY++ PRHIEFQV+AD+ GNV+H  +R+CSIQRR+QKL+EEAPSP +TPELR+ MG         IGY   GTVEFL
Sbjct:   84 FLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITSKKLMKKAGVPVIPGTDQGVSDPDEAARIADSIGYPVIIKASAGGGGIGMRAVYEEDELIRAMESTQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLADRECSIQRRHQKLIEEAPSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFL 277          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: ACCC_PSEAE (Biotin carboxylase OS=Pseudomonas aeruginosa GN=accC PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.678e-54
Identity = 103/197 (52.28%), Postives = 136/197 (69.04%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE-AVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD 590
            FLAENA F E     G  F+GP  + IR+MGDK +A++ MK AGVPTVPGSDG L   EE A+ +A E+G+PV+IKA  GGGGRGMR+  +  E +K  +  ++EA AAFGN  VYLEK++ NPRH+E QVL+D  GN +H G+RDCS+QRR+QK++EEAP+P +  + R+ +          IGY G GT EFL +
Sbjct:   84 FLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVIEEAPAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLYE 280          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: ACCC_ECOLI (Biotin carboxylase OS=Escherichia coli (strain K12) GN=accC PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.568e-54
Identity = 102/197 (51.78%), Postives = 136/197 (69.04%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD 590
            FL+ENA F E     G  FIGP  ++IR+MGDK +A   MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +   ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+QRR+QK++EEAP+P +TPELR+ +G+        IGY G GT EFL +
Sbjct:   84 FLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE 280          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: ACCC_ECO57 (Biotin carboxylase OS=Escherichia coli O157:H7 GN=accC PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.792e-54
Identity = 102/197 (51.78%), Postives = 136/197 (69.04%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD 590
            FL+ENA F E     G  FIGP  ++IR+MGDK +A   MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +   ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+QRR+QK++EEAP+P +TPELR+ +G+        IGY G GT EFL +
Sbjct:   84 FLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNSIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE 280          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: PYC_BACSU (Pyruvate carboxylase OS=Bacillus subtilis GN=pyc PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.615e-53
Identity = 98/195 (50.26%), Postives = 133/195 (68.21%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL 587
            FL+EN  F   C E GI FIGP  + + + GDK  ARE  + AG+P +PGSDG  ++ E   +     G+P++IKA+ GGGGRGMR+ +   E  +  ++AKSEA AAFGND VY+EK ++NP+HIE QV+ DK GNVVH  ERDCS+QRR+QK++E APS +L+PELR  + +       ++ YI  GTVEFL+
Sbjct:   89 FLSENIHFARRCEEEGIVFIGPKSEHLDMFGDKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERDCSVQRRHQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV 283          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: ACCC_HAEIN (Biotin carboxylase OS=Haemophilus influenzae GN=accC PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.615e-53
Identity = 101/197 (51.27%), Postives = 134/197 (68.02%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK-LADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD 590
            FL+ENA F E     G  FIGP  D IR+MGDK +A + MK AGVP VPGSDG + +     K +A  +G+P++IKA+ GGGGRGMR+ +      + +   K+EA AAF ND VY+EKY++NPRH+E QVLAD +GN V+  ERDCS+QRR+QK++EEAP+P +T E+R+ +G         IGY G GT EFL +
Sbjct:   84 FLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDGPVSNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLYE 280          
BLAST of FC921609 vs. ExPASy Swiss-Prot
Match: MCCA_DICDI (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=mccA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.469e-52
Identity = 97/195 (49.74%), Postives = 136/195 (69.74%), Query Frame = 3
Query:    3 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL 587
            FL+EN+ F ++C   GI FIGP  D+I+ MG KS +++ M  AGVPT+PG  G  QS       A ++G+PV+IKA  GGGG+GMR+ +   +    ++ +K EA A+FG+  V +EKY+ +PRH+E QV AD++GN VH  ERDCS+QRR+QK++EEAP+P L+ ELRK MGD       ++GY+G GTVEF+L
Sbjct:  112 FLSENSDFADLCEREGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHGEDQSMSVLKSEAAKIGYPVLIKAVMGGGGKGMRIVEREEDLEDGVESSKREATASFGDSRVLVEKYLVHPRHVEIQVFADRHGNCVHLFERDCSVQRRHQKIIEEAPAPHLSEELRKKMGDAAVAAAKAVGYVGAGTVEFIL 306          
The following BLAST results are available for this feature:
BLAST of FC921609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ACCC_ANASP1.046e-7465.83Biotin carboxylase OS=Anabaena sp. (strain PCC 712... [more]
ACCC1_BACSU4.404e-6559.18Biotin carboxylase 1 OS=Bacillus subtilis GN=accC1... [more]
PYCA_METJA8.894e-5851.53Pyruvate carboxylase subunit A OS=Methanocaldococc... [more]
PYCA_METTH3.737e-5653.61Pyruvate carboxylase subunit A OS=Methanobacterium... [more]
ACCC_PSEAE2.678e-5452.28Biotin carboxylase OS=Pseudomonas aeruginosa GN=ac... [more]
ACCC_ECOLI4.568e-5451.78Biotin carboxylase OS=Escherichia coli (strain K12... [more]
ACCC_ECO577.792e-5451.78Biotin carboxylase OS=Escherichia coli O157:H7 GN=... [more]
PYC_BACSU8.615e-5350.26Pyruvate carboxylase OS=Bacillus subtilis GN=pyc P... [more]
ACCC_HAEIN8.615e-5351.27Biotin carboxylase OS=Haemophilus influenzae GN=ac... [more]
MCCA_DICDI1.469e-5249.74Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]

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Properties
Property NameValue
Genbank descriptionC32107C09EF RVDevelopN Citrus clementina cDNA clone C32107C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921609 ID=FC921609; Name=FC921609; organism=Citrus clementina; type=EST; length=601bp
GATTCCTTGCTGAGAATGCTGTTTTTGTTGAAATGTGCAGAGAACACGGA
ATTAACTTTATTGGTCCCAATCCTGACAGCATCCGCATTATGGGCGACAA
GTCAACTGCTAGGGAAACAATGAAGAATGCAGGTGTTCCTACTGTCCCGG
GTAGTGATGGATTGTTACAGAGCACAGAAGAAGCAGTCAAGCTAGCCGAT
GAGCTAGGATTTCCTGTGATGATCAAGGCAACTGCCGGTGGTGGAGGACG
TGGAATGCGTCTTGCTAAAGAACCTGGTGAATTTGTTAAGTTGCTTCAGC
AAGCTAAGAGTGAAGCTGCCGCTGCATTTGGAAATGATGGAGTTTATTTG
GAAAAATACGTTCAAAATCCAAGACATATTGAATTCCAGGTTCTTGCTGA
TAAATATGGCAATGTTGTCCACTTTGGTGAACGTGACTGCAGCATCCAGA
GACGTAACCAAAAGCTTTTGGAAGAAGCTCCGTCTCCTGCATTGACCCCT
GAACTGCGGAAAGCCATGGGTGATGCAGCTGTTGCAGCAGCAGCATCCAT
TGGTTACATTGGTGTCGGAACGGTTGAGTTTCTTTTGGATGAAAGAGGTT
C
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