FC921618

Overview
NameFC921618
Unique NameFC921618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14282 contig Ccv1_Contig14282:97..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 429.483 bits (1103), Expect = 7.222e-120
Identity = 200/208 (96.15%), Postives = 205/208 (98.56%), Query Frame = 1 
Query:   19 MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            MDTGGNSL SG DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQVLKPFPAR+RDLCRFHADDYVSFLRSITPETQQDQ+RQLKRFNVGEDCPVFDGL+SFCQTYAGGSVGG+VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFY TDRVMTVSFHK
Sbjct:    1 MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHK 208
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.494e-104
Identity = 177/207 (85.51%), Postives = 192/207 (92.75%), Query Frame = 1 
Query:   25 TGGNSLPS-GTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            +GGNSLPS G DG KR+VCYFYDP+VGNYYYGQGHPMKPHRIRMTH+LLA YGLL  MQV +P PARER+LCRFHA++Y++FLRS+TPETQQDQ+R LKRFNVGE+CPV DGL+SFCQTYAG SVGGAVK NHG  DIAINW+GGLHHAKKCEASGFCYVNDIVLAILELLK HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    8 SGGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEEYINFLRSVTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHG-HDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 213
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.345e-86
Identity = 144/197 (73.10%), Postives = 165/197 (83.76%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 6.823e-86
Identity = 143/197 (72.59%), Postives = 164/197 (83.25%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 6.823e-86
Identity = 143/197 (72.59%), Postives = 164/197 (83.25%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 6.823e-86
Identity = 143/197 (72.59%), Postives = 164/197 (83.25%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.520e-85
Identity = 142/197 (72.08%), Postives = 164/197 (83.25%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.520e-85
Identity = 142/197 (72.08%), Postives = 164/197 (83.25%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.776e-85
Identity = 141/197 (71.57%), Postives = 165/197 (83.76%), Query Frame = 1 
Query:   52 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            T G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   D+ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    4 TLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 200
[Close]
BLAST of FC921618 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.195e-84
Identity = 139/195 (71.28%), Postives = 164/195 (84.10%), Query Frame = 1 
Query:   58 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK 642
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 201
The following BLAST results are available for this feature:
BLAST of FC921618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HDA19_ARATH7.222e-12096.15Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE2.494e-10485.51Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDAC1_CHICK2.345e-8673.10Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]
HDAC1_RAT6.823e-8672.59Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE6.823e-8672.59Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN6.823e-8672.59Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDAC1_PONAB1.520e-8572.08Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_HUMAN1.520e-8572.08Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1A_XENLA5.776e-8571.57Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDAC2_MOUSE2.195e-8471.28Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32107D06EF RVDevelopN Citrus clementina cDNA clone C32107D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921618 ID=FC921618; Name=FC921618; organism=Citrus clementina; type=EST; length=644bp
CCAAGAAATATTATTCATATGGACACTGGAGGCAATTCTTTACCATCTGG
TACTGATGGCGTTAAGAGAAAGGTGTGTTATTTCTACGACCCAGAGGTGG
GCAATTACTACTATGGACAGGGTCACCCGATGAAACCCCATCGCATTCGT
ATGACCCATGCCCTTCTCGCCCACTACGGCTTGCTTCAGAACATGCAGGT
CCTCAAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCCGCTTCCATGCCG
ATGATTATGTCTCCTTCCTCAGGAGTATCACCCCTGAGACTCAGCAGGAT
CAGCTTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGATTGCCCTGTCTT
TGACGGTCTTTTCTCCTTCTGTCAAACTTATGCTGGGGGCTCTGTTGGTG
GTGCTGTCAAGTTGAATCACGGCCTCTGTGATATTGCTATCAATTGGGCC
GGTGGCCTTCATCATGCTAAGAAATGTGAAGCTTCCGGATTCTGTTATGT
CAATGACATTGTCTTGGCCATTTTGGAGCTACTTAAGCAGCATGAGCGTG
TATTATATGTAGATATTGATATCCATCATGGAGATGGCGTGGAGGAAGCA
TTTTATACAACTGATAGGGTAATGACTGTTTCATTCCATAAGTT
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