FC921627

Overview
NameFC921627
Unique NameFC921627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT21_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.347e-66
Identity = 120/164 (73.17%), Postives = 133/164 (81.10%), Query Frame = 3
Query:  186 LQRQILKRTVKESKAKLNICXXXXXXXXXXXXXXXPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            LQRQ+LKR   +   +  I                PP +PPF H P+PY GPSAD+V QKRK+FLGPS+FHYYQKPLNIVEGKMQYL+DE+GRRYLDAFAGIVTVSCGHCHPD+LNAI EQSKLLQHATTIYLHHAI DFAEALA+KMPGNLKVVYFVNSG+EA
Sbjct:    3 LQRQLLKRATSDIYHRRAISLLRTDFSTSPSIADAPPHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEA 166          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT22_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.367e-50
Identity = 90/127 (70.87%), Postives = 107/127 (84.25%), Query Frame = 3
Query:  297 QLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            +LPPF + P PYTGPSAD +  KRK+FL PS+F  Y+KPLNIV+GKMQYLFDE+GRRYLDAFAGI  V+CGHCHPDV+  +  Q K LQH T +YL+HAIADF+EALASK+PG+LKVV+F NSGTEA
Sbjct:   42 RLPPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAFAGIAVVNCGHCHPDVVEPVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSGTEA 168          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT23_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.306e-49
Identity = 82/128 (64.06%), Postives = 107/128 (83.59%), Query Frame = 3
Query:  294 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            P++PPF++ P PY GPS  ++  KR++FL P++FH+Y  PLNIVE KMQY+FDENGRRYLDAF GI TVSCGHCHP+V+N++ +Q KL+ H+T +YL+H I+DFAEAL S +PG+LKVV+F NSGTEA
Sbjct:   44 PKMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEA 171          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT2_PONAB (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.511e-26
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  294 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            P++PP D  P+ Y     ++V +  K+ L P +  Y+QKPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +T++ H  + ++AE LA+ +P  LKV++ VNSG+EA
Sbjct:   46 PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEA 173          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT2_HUMAN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  294 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            P++PP D  P+ Y     ++V +  K+ L P +  Y+QKPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +T++ H  + ++AE LA+ +P  LKV++ VNSG+EA
Sbjct:   46 PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEA 173          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT2_RAT (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  300 LPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            +PP D  P+ Y   + + V +  KQ L P    Y+QKPL + +G M++LFD  G RYLD F+GIVTV  GHCHP V     +Q   L H ++++ H  + ++AE L++ +P  LKV++ VNSG+EA
Sbjct:   46 MPPCDFSPEKYQSLAYNHVLEIHKQHLSPVNTAYFQKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVGVGHCHPKVTAVAKKQMDRLWHTSSVFFHSPMHEYAERLSALLPEPLKVIFLVNSGSEA 171          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT2_BOVIN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  294 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            P +PP D  P+ Y   +  +V +  KQ L P    Y+ +PL + +G +++LFD  G RYLD F+GIVTVS GHCHP V  A   Q   L H ++++ H  I ++AE L++ +P  LKVV+ VNSG+EA
Sbjct:   46 PSMPPCDFTPERYQSLAYSRVLEIHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQRQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEA 173          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT2_MOUSE (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  300 LPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            +PP D  P+ Y   +  +V    KQ L P    Y++KPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H ++++ H  + ++AE L++ +P  LKV++ VNSG+EA
Sbjct:   47 MPPCDFSPEKYQSLAYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLVNSGSEA 172          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L1_XENLA (Alanine--glyoxylate aminotransferase 2-like 1 OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  348 DQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            +++ + RK+ +GPS   ++   P+ IV  K QY+FDE G RYLD    +  V  GH HP+V  A  +Q +LL +  + +LH  +  +AE L S +P  L V YFVNSG+EA
Sbjct:    8 EKIMEIRKKHIGPSCKVFFANDPIKIVHAKGQYMFDEKGERYLDCINNVAHV--GHSHPEVTKAALKQMELL-NTNSRFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEA 115          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L1_HUMAN (Alanine--glyoxylate aminotransferase 2-like 1 OS=Homo sapiens GN=AGXT2L1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  366 RKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            RK+ +GPS   ++   P+ IV  + QY+FDENG +YLD    +  V  GHCHP V+ A  +Q +LL +  + +LH  I ++A+ L++ +P  L V YF NSG+EA
Sbjct:   14 RKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVAHV--GHCHPGVVKAALKQMELL-NTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEA 115          
The following BLAST results are available for this feature:
BLAST of FC921627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AGT21_ARATH4.347e-6673.17Alanine--glyoxylate aminotransferase 2 homolog 1, ... [more]
AGT22_ARATH4.367e-5070.87Alanine--glyoxylate aminotransferase 2 homolog 2, ... [more]
AGT23_ARATH6.306e-4964.06Alanine--glyoxylate aminotransferase 2 homolog 3, ... [more]
AGT2_PONAB1.511e-2644.53Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_HUMAN1.974e-2644.53Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_RAT3.723e-2542.86Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_BOVIN8.293e-2543.75Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_MOUSE1.415e-2442.86Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AT2L1_XENLA1.852e-1641.44Alanine--glyoxylate aminotransferase 2-like 1 OS=X... [more]
AT2L1_HUMAN1.852e-1641.90Alanine--glyoxylate aminotransferase 2-like 1 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC32107E04EF RVDevelopN Citrus clementina cDNA clone C32107E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921627 ID=FC921627; Name=FC921627; organism=Citrus clementina; type=EST; length=725bp
GACACTCACTTAACTTTGAAGTTAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCATTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAAATCTGTTTTCTTTC
TTTATGTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATC
TTGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTC
TTTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGC
TGCCACCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGAT
CAAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTA
TTATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTG
ATGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTG
TCCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAG
CAAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTG
ATTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTA
TATTTTGTCAATTCTGGGACCGAAGCAATGAGTTAGCATGCTAATGGCCA
ACTTTCACAGGTAATCTGGCATGAT
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