FC921628

Overview
NameFC921628
Unique NameFC921628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.388e-58
Identity = 114/191 (59.69%), Postives = 143/191 (74.87%), Query Frame = 1
Query:  139 NKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPP-FVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLR-KIQPDDHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV 705
            NKQVIF+ ++ G PKE+D     + ++L+ P+GS S   LVKNLYLSCDPYMR RM     SS +   + PG+P+ G+GVS+V++S +P++K GDL+ G  GWEEYS+I     +  KIQ  D +PLSY+ GLLGMPG TAYAGF+EVCSPK GE V+VSAASGAVGQLVGQ AK+ GCYVVGSAGS +KV
Sbjct:    4 NKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKS--VLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTD-VPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKV 191          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.746e-57
Identity = 112/192 (58.33%), Postives = 144/192 (75.00%), Query Frame = 1
Query:  139 NKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSS--FTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRK-TEQLRKIQPDDHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV 705
            NKQVI + Y+ G P E+D +   + ++L+ P+G++S   LVKNLYLSCDPYMR RM      T++    + PGQP++G+GVS++++S +P++K GDL+ G   WEEYS+I   T    KIQ  D +PLSY+ GLLGMPG TAYAGF+EVCSPK GE V+VSAASGAVGQLVGQLAK+ GCYVVGSAGS +KV
Sbjct:    5 NKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNS--VLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTD-VPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKV 193          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.115e-32
Identity = 82/197 (41.62%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  133 VENKQVIFRGYIE---GAPKETD-MEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPDDH---IPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQK 702
            V N  VI + Y++   G P   + +  +     L+  +  +    L+KN+Y S DPY+R RM+S   +SYIPP   G+P     V+KVV S    +KPG  V   +GWEEY+ + K + L  +QP ++   +PL   +G LGMP  TAY G   +  PK+GE +++SAASGAVGQ+ GQLAK  G +VVGS GS +K
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSK-QALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEK 197          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.752e-30
Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  247 GAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPDDHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQK 702
            G  L++ +YLS DPYMRGRM  S   SY PP   G  + G  VS+VV+S++P+++ GD V G++GW++Y  I   + L K+      P S+ +G+LGMPGFTAY G  ++  PK GE + V+AA+G VG  VGQ+ KL GC VVG AG ++K
Sbjct:   39 GQVLLRTVYLSLDPYMRGRM--SDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEK 186          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 79/179 (44.13%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  169 EGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPDDHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV 705
            +G P   D   +   I +  PK    G  LVK LY+S DPYMRGRM+   T SY+ PF   + + G  +++VV SD  + K GD+V G   W+E+S + ++  LRKI      P S ++G+LGM G TAY G  ++  PK GE V VS A+GAVG  VGQ+AK+ G  VVG AGS +K+
Sbjct:   15 QGIPVHEDF--RFETIPVPEPK---QGEVLVKTLYVSVDPYMRGRMQD--TKSYVEPFALDKALSGGVIAEVV-SDGNHLKKGDIVIGNLSWQEFSAVSESA-LRKIDTS-LAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKI 183          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 78/194 (40.21%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  133 VENKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMR-GRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPD--DHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV 705
            V  K    + +  G P ++D E+K   +        ++G  L++ L+LS DPYMR G  R             G  + G  V++VV+S NP +  G LV   +GW  +S I   +QL K+  +  D +PLS  +G +GMPG TAY G  E+C  KSG+ V V+AA+GAVG +VGQ+AK+ GC VVG+AGS +KV
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKTVELP-----PLNNGEVLLEALFLSVDPYMRLGSKRLK----------EGDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHS-ISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKV 179          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 81/201 (40.30%), Postives = 112/201 (55.72%), Query Frame = 1
Query:  133 VENKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPD--DHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVIF*RIAWI 729
            V  K    + +  G P  +D E+K     ++ P   D G  L++ LYL+ DPYMR   +S            G  + G  V++VV+S N  F  G +V   +GW  +S I   E+L K+  +  D +PLS  +G +GMPG TAY G  ++C  K GE V VSAA+GAVG +VGQ+AKL GC VVG+AGS +KV     AW+
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKT----VELPPLKD-GEVLLEALYLTVDPYMRIMAKS---------LKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKV-----AWL 182          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 74/195 (37.95%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  133 VENKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPD--DHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVIF 711
            V+ K    + + EG P +++ E++ + +        ++G  L++ L+LS DPYMR   +             G  + G  V++VV+S N  F  G +V    GW  +S I     LRK+  +  D +PLS  +G +GMPG TAY G  ++C  K GE V V+AA+GAVG +VGQ+AKL GC VVG+AGS +KV +
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRTTELP-----PLNNGEVLLEALFLSVDPYMRVAAKK---------LKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHS-ISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAY 181          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 75/195 (38.46%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  133 VENKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPD--DHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVIF 711
            V+ K    + + EG P + + E+K + +        ++G  L++ L+LS DPYMR   +             G  + G  V++VV+S N  F  G +V+   GW  +S I     L K+  +  D +PLS  +G +GMPG TAY G  ++C  K GE V VSAA+GAVG +VGQ+AKL GC VVG+AGS +KV +
Sbjct:    2 VQAKSWTLKKHFEGFPTDGNFELKTTELP-----PLNNGEVLLEALFLSVDPYMRVAAKK---------LKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAY 181          
BLAST of FC921628 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 77/195 (39.49%), Postives = 111/195 (56.92%), Query Frame = 1
Query:  133 VENKQVIFRGYIEGAPKETDMEIKISRIQLKAPKGSDSGAFLVKNLYLSCDPYMRGRMRSSFTSSYIPPFVPGQPVEGFGVSKVVDSDNPNFKPGDLVSGFTGWEEYSLIRKTEQLRKIQPD--DHIPLSYHIGLLGMPGFTAYAGFHEVCSPKSGEYVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVIF 711
            V+ K    + + +G P ++D E+K   ++L   K   +G  L++ L+LS DPYMR   +             G  + G  V++VV+S N  F  G +V   +GW  +  I   + L K+  +  D +PLS  +G +GMPG TAY G  EVC  K GE V VSAA+GAVG +VGQ+AKL GC VVG+AGS +K+ +
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKT--VELPPLK---NGEVLLEALFLSVDPYMRIASKR---------LKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY 181          
The following BLAST results are available for this feature:
BLAST of FC921628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P2_ARATH3.388e-5859.69Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH3.746e-5758.33Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO7.115e-3241.62Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI1.752e-3047.37Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU6.659e-3044.13Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RABIT1.640e-2840.21Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_BOVIN3.654e-2840.30Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_RAT8.140e-2837.95Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_MOUSE8.140e-2838.46Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_CAVPO1.063e-2739.49Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]

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Properties
Property NameValue
Genbank descriptionC32107E06EF RVDevelopN Citrus clementina cDNA clone C32107E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921628 ID=FC921628; Name=FC921628; organism=Citrus clementina; type=EST; length=731bp
CGAGTAAACAATATAAGAAGCAAACATTTTGTTAGTGTTTGCAAATTTGT
AAGCCGAAAATTTGAAATTGAAACTTTGTTGGTTTGCTGAAAACGTGAGT
GGGTGCTTGCTGTACTCGTTATGATGGAACAAGTGGAGAACAAGCAAGTG
ATATTCAGAGGGTACATAGAGGGAGCACCCAAAGAGACAGATATGGAAAT
CAAGATTAGCAGAATACAACTCAAGGCACCAAAAGGGTCAGACTCGGGAG
CATTTTTGGTTAAGAATCTTTATCTATCTTGTGACCCTTACATGAGAGGC
CGCATGCGCAGCTCCTTTACTTCTAGCTACATTCCCCCTTTTGTTCCTGG
TCAGCCCGTTGAAGGATTTGGTGTGTCGAAAGTCGTGGATTCAGATAACC
CAAATTTCAAGCCAGGCGATTTAGTTTCAGGGTTCACTGGTTGGGAAGAA
TACAGCTTGATTAGGAAAACAGAGCAGCTTAGAAAAATTCAGCCAGATGA
TCATATTCCTCTATCATATCATATCGGACTTCTTGGTATGCCGGGTTTTA
CTGCTTATGCTGGATTTCATGAGGTTTGCTCCCCTAAAAGTGGGGAGTAT
GTTTTTGTCTCTGCAGCTTCAGGAGCTGTTGGTCAACTTGTTGGCCAACT
CGCTAAGTTGCATGGTTGCTATGTAGTTGGAAGTGCTGGAAGCAGTCAAA
AGGTGATCTTTTGAAGAATAGCTTGGATTTG
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