FC921636

Overview
NameFC921636
Unique NameFC921636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921636_ssr45 microsatellite FC921636_ssr45:45..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11344 contig Ccv1_Contig11344:129..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.060e-80
Identity = 139/167 (83.23%), Postives = 153/167 (91.62%), Query Frame = 1
Query:  193 MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPL 687
            MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LNR+FRGAASSDSVWE KLP NYQDLLDL+PPERY +LSKKDIFA+LSRP+PFDD NKEVW+DRVTGRVC++IS + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+  L
Sbjct:    1 MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHL 167          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.647e-47
Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 1
Query:  202 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVP 684
            S SS   +   + PGLGD+PE+CVA +   L P EIC  ++LNRAFRGA+ +D VWE+KLP NY+D+L+ +      NL K+ ++A LSR   FDD  K+VW+D+ T  VCLSIS K ++ITGI+DRRYW+ IPT+ESRF  VAYLQQIWWFEVDG +  P
Sbjct:   13 SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFP 173          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.285e-45
Identity = 92/170 (54.12%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  193 MGASLSS------LTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLN-LSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKV 681
            MGA++S         D+  S    L D+PE+CVA +   L PPEIC LARLNR FR A+S+D +WE+KLP+NY+ +   +  E  L  L KKD++A LS+P  FDDG KE+W+D+ TGR+CLSIS+KA+ ITGI+DRRYW+ IPT+ESRF   AY+QQIWWFEV G  ++
Sbjct:    1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEI 170          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 83/161 (51.55%), Postives = 115/161 (71.43%), Query Frame = 1
Query:  202 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVP 684
            +LSS   + + + PGLGD+PESCVA +   L P EIC  ++LN AF GA+ +D VWE+KLP +Y+ +L+ +      NL K+DIF  LSR   FD+GNK+ W+D+ TG +CL  S K ++ITGI+DRRYW+ IP+++SRF  VAY+QQIWWF+VDG +  P
Sbjct:   11 NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFP 171          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 84/171 (49.12%), Postives = 116/171 (67.84%), Query Frame = 1
Query:  193 MGASLSSLTDNGESMGP--GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERY-------LNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVK 678
            MGA+ SS+  +    G   GL D+PE+C+  +FMY+ PPEIC LAR+N++F  A+ SD+VWE+KLPSNY+ L+  +  ++        L   KK+I+A L RP  FD G KE WLD+ +G+V L+IS KAM ITGI+DRRYW  I ++ESRF  + YL+QIWW E  G ++
Sbjct:    1 MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIR 171          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 51/137 (37.23%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  259 PESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 669
            PE C++ +  +  P + C  A +++ F     SD +WE  LP++Y+ L+   PP R  +  K+  F+L + PV FDD  K VWL++ +G+ CL +S   ++I   ++ +YW WIP  ESRF  VA L+ + WFE+ G
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRG 151          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  238 GPGLGD-IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS-TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 669
            GP L D +PE C++ +  + +P + C  A +++ F  A +SDSVW+  LPS+Y     L+PP R  +  K+  FA+   PV  +DG K  WL++  G+ C  +S  K+M IT +   +YW WI   E+RF  V  L  + WFEV G
Sbjct:   38 GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYS---SLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRG 180          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 55/162 (33.95%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  226 GESMGPGLGD---IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            GE + PG      +PE C++ +  + +P + C  A +++ F  A SSD VW+  LP  Y+ L+      R     K+  FAL   PV  +DG K  WL++ +G+ C+ +S+K + IT      YW WI   ESRF+ +A L  + WFE+ G     +L   T
Sbjct:   51 GEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGT 209          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 61/186 (32.80%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  178 KLKIEMGASLSSLTDNGESMGPGLG----------DIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            K++  +G+S      + ES+G G G          D+PE C++ +  + +P ++C  A ++++F  A   DS+WE  LPS Y+ L+   PP R  + SKKD+ F L   PV  +DG K  WL+  +G+ C+ ++ K + ITG  +  YW WI   ES F  V  L     F++ G +   +L + T
Sbjct:   12 KIRQVLGSSSKVQKHDVESIGGGGGEIVPGHSPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLI---PPWRVFS-SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGT 193          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  247 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 669
            L D+PE CV+ +  + +P + C LA +++ F  A  SD VWE  +P  Y+ L+      ++L  SKK++ FAL  + V  DDG K +W+++   + C+ IS   +AI      + W WIP  ++RF  VA L ++  FE+ G
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFL--SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRG 175          
The following BLAST results are available for this feature:
BLAST of FC921636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2A15_ARATH5.060e-8083.23F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH5.647e-4755.90F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH5.285e-4554.12F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH4.474e-4451.55F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH1.347e-4049.12F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
P2B10_ARATH2.088e-2537.23F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
PP2B2_ARATH1.768e-2438.36Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
FB95_ARATH1.954e-2333.95F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B6_ARATH4.814e-2232.80Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]
PP2B8_ARATH1.072e-2135.21Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC32107F02EF RVDevelopN Citrus clementina cDNA clone C32107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921636 ID=FC921636; Name=FC921636; organism=Citrus clementina; type=EST; length=703bp
GGTCGCACACAGCACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCT
CTCTCTCTCTCGCTTTATCCTTCAGTCTCTTCTACACCATGACGACGAGT
TAGGTATAAGCAACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAA
AGGCTTTGGTAAATTCAGTACAGTAATAAATTAAAAATAGAAATGGGGGC
GTCGCTATCGAGCCTGACCGACAACGGAGAGAGCATGGGGCCGGGACTGG
GAGACATACCGGAGAGCTGCGTGGCGTGCGTGTTCATGTACTTGACGCCG
CCGGAGATTTGCAATCTCGCCAGATTAAACCGCGCTTTCCGCGGAGCGGC
GTCGTCTGATTCCGTGTGGGAAAACAAGCTCCCTTCTAACTATCAAGATC
TGCTCGATTTGATGCCTCCTGAACGCTACCTTAACTTGTCCAAAAAAGAC
ATTTTTGCCCTCCTCTCCCGCCCCGTTCCCTTCGATGATGGCAATAAGGA
AGTGTGGTTAGATAGAGTGACGGGAAGAGTTTGCTTGTCAATATCAACAA
AGGCTATGGCAATCACCGGAATTGAAGATCGCAGATATTGGAATTGGATT
CCCACTGAAGAATCAAGATTCCATGTGGTGGCCTATTTGCAACAAATATG
GTGGTTCGAGGTGGATGGGGTAGTGAAAGTTCCACTCCTGCTGATGTCTA
CAC
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