FC921640

Overview
NameFC921640
Unique NameFC921640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14234 contig Ccv1_Contig14234:7..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 72/125 (57.60%), Postives = 95/125 (76.00%), Query Frame = 2
Query:   17 MASSVMLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            MASS  L+KLV  C++ ++C M        A V+C  VVN+L+PCI+YV+ GGA+  +CC GVR+LY+ A++TADRQ++C CLKQAV+GI YT    GLAAGLPGKCG+NIPY+ISPSTDC  ++
Sbjct:    1 MASSGQLLKLV--CLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.287e-26
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            +TC  V + L+PCI+Y+  GG V  NCCNGVR+L NAA++TADRQ  C CLK A + I      L LAAGLPGKCG+++PY+ISPSTDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIK--GLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.056e-24
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   17 MASSVMLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV--SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            MASS   M L   C++VL  ++G+     +  VT   V N L+PCI+Y+  S  GAV   CC G+++L +AA++T  RQ  C C+K A +GI  T    GLA+GLPGKCG+NIPY+ISPSTDC+ V+
Sbjct:    1 MASS---MSLKLACVVVLCMVVGAPLA--QGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGI--TGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 2
Query:   59 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            +L+ VCL+  A    +A V+C TV+ DL PC+SYV+ GG V T CCNG+ TL + A+++ DRQ VC C+K A+ G++ +   +  A  LP KCG+++PY+ SPSTDC  +Q
Sbjct:    4 LLLAVCLV-LALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.352e-24
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   38 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV--SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            M L   C++VL  ++G+     +  VT   V N L+PCI+Y+  S  GAV   CC G+++L +AA++T  RQ  C C+K A +GI  T    GLA+GLPGKCG+NIPY+ISPSTDC+ V+
Sbjct:    1 MSLKLACVVVLCMVVGAPLA--QGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGI--TGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 59/120 (49.17%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   32 MLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            M    VT   LV+   M    VS    +TC  V + L+PCI YV  GGAV   CCNG+RT+   AR+TADRQT C CLK     IS        AAGLPGKCG+N+PY+IS ST+C+ V+
Sbjct:    1 MASSAVTKLALVVALCMA---VSVAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSIS--GVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.938e-24
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   59 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            ++V +C++ S  V     +TC  V ++L+PCI+YV  GGAV   CCNG+R + N A++TADRQT C CLKQ   +V G++        AA LPGKCG+N+PY+ISPST+C+ V+
Sbjct:   11 LVVALCMVVS--VPIAQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANN-----AAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.167e-23
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   38 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            M ++  C  V   ++G+ +      ++C  V + L+PCISY++ GGAV   CC+GV++L +AA++T DRQ  C CLK A + IS      G AA  PGKCG++IPY+ISPSTDCS+VQ
Sbjct:    4 MAMMVLCAGVTCMVVGAPYTEA---LSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSIS--GVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 2
Query:   59 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            ++V +C++ S  V     +TC  V ++L+PCI YV  GGAV   CCNG+R + N AR+T DRQ  C CLKQ   +V G++        AA LPGKCG+NIPYQISPST+C+ V+
Sbjct:   11 LVVALCMVVS--VPIAQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNN-----AAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 2
Query:   59 ILVLVCLMGSAFV-STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            +L L  L+ S F   ++A ++C  V  +L PC+ YV  GGA+  +CCNG+R L   A S +D+Q VC C+K  V  +SY+   L  AA LPGKCG+ +PY+I PST+C+ ++
Sbjct:    5 VLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
The following BLAST results are available for this feature:
BLAST of FC921640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_PRUDU4.133e-3757.60Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
LTP1_MORNI4.287e-2658.06Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_GOSHI1.056e-2448.03Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP6_ARATH1.801e-2446.85Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP1_GOSHI2.352e-2447.50Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_MALDO3.072e-2449.17Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PRUAV8.938e-2448.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN1.167e-2346.61Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.991e-2349.12Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTPA_ARATH3.396e-2343.75Non-specific lipid-transfer protein 10 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC32107F06EF RVDevelopN Citrus clementina cDNA clone C32107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921640 ID=FC921640; Name=FC921640; organism=Citrus clementina; type=EST; length=620bp
AAGCTAGGGTATCATAATGGCTAGCTCCGTAATGCTGATGAAACTTGTGA
CAGGCTGCATCTTGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCC
ACCAAAGCACAAGTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATG
CATATCCTACGTGTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACG
GAGTGAGGACACTCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACC
GTGTGTACGTGCTTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTA
CCAGCTCGGACTCGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATCC
CTTACCAGATCAGCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGA
TGAACTAGTAGCCATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCAT
GGGGTGAGAGAATAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGT
TAAATAGAAGTTGTTAGCGTCATCTGGTGGGATTTATGTTGTCTCATGTT
TTGTTAGGTTCTGTCCCAACCATAAGTACTAAAGAATAAGATTTTGTAAG
TTACGTTTATGGAGTGACAT
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